UFO11788.5prime Sequence
1081 bp (1000 high quality bases) assembled on 2012-06-28
> UFO11788.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGAGAACAATGCCCGCCCATC
CCCACCAGATTCCCGTATTCCTGTCGAAGAACCTGAGGGACAGCCTGTAT
CTCTTTCAATACCCCACGAAAACGGAGCTCCCCAACCACGATGACTCCGT
GATTGTCAATTGTTGTGTAAAACCAATCGCCCAGGAGGTGAAGGTGGACT
TCGGCCTGGACATTGAGTCGGCCCACTTCGATCGCTTCAAGGGCGAGCAA
TTTGCGGTGGCCGCCGACGGAAAGAACACCTATGGAGCAGTTCCACCAAA
GGGTCAGGAGCGACCCACCTACAAACGTGGCATCATGGACAAACAGGCCT
TCACAAGCTCGCGTTCCATAACCGATGTGGCCAAGTACATAGTGGGCATC
TTTACGGATCGGGAGGTGCATCTGTCGCCACTTACATCCATAGTCCAAAT
GCGACCCGTTCTCAGTCACTTCGATAAGGACGACAAGCGCAAGAAGGCGG
AACTGAAGGCTCAAACGGAGGACACGGACGATGACGAGGTGCTGCAGCAG
GTCACGGTTAAATTTGCACGAGGAAATGCCAAAAACAGCGGAAAGGAGCA
ACGTGTCGGCACCTACGACAGTTTCGTCCAGCGAATTGCGGATGAGCCGT
GGTGCGAGGCCTACTGGCACTCGAGGGGCACGCCCACCGCCGAACTGGAG
CGCCAGAAGCTCTTTGCCACCAGTCATCACGGCAGTTCCTCTTTGGCTCT
CGCTCCTGACGAATATCTTCGAAAGCTTCTGCCCTACGACGAGCATGTGC
AGACGGTAGCCCCAGCAGCTGCTTCTGCTGCCGCCCAGTACTTCCCGTCT
ACAACAAGGCCATGCTTAAGTCTATGCCGCTGCTGGAACAGCTTACAGTG
CTACTGAGAGATGCCGCGGATGCTTCTCGTTCAGCGACGTCATTAGTATT
CCTCGCGGAGCCACGTGATCCGCATGTGCTGCGACAGGTGCTTGCTTTGC
TGCCAGTTGGCATCTACTGCACGCACTGATG
UFO11788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin-RC | 1673 | CG10582-RC | 126..1126 | 78..1073 | 4680 | 98.5 | Plus |
| Sin-RA | 1614 | CG10582-RA | 96..1067 | 107..1073 | 4535 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21031950..21032898 | 78..1028 | 4485 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:51 has no hits.
UFO11788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:21 Download gff for
UFO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RC | 112..1102 | 78..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:52 Download gff for
UFO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RC | 126..1116 | 78..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:11 Download gff for
UFO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RC | 126..1116 | 78..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:11 Download gff for
UFO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21031941..21032940 | 67..1064 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:52 Download gff for
UFO11788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21025041..21026040 | 67..1064 | 98 | | Plus |
