UFO11789.5prime Sequence
1111 bp (1019 high quality bases) assembled on 2012-06-28
> UFO11789.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGACATCAC
CTGGCTGCCCACCGCCTGCGGATCGCTGGCTCCGGCCCTCATCCCGCCAG
CGCATATCGTCATCCTGTGGTACTTCTGGGAGAACTATGCCCGCTACGTG
GACAGGCACTTCTGCACCTGCTCCTGTTGGGACACCGTCTTCAAGGGACC
CTACGAGTCGGGCGTGGCGGCCTACAAGCATATGTACTTCAATGCCACGC
CCAACAGCTTCAAGATGTGGATTCTGACCGTGTTCGCCGTGATTGCCCTG
TACGAGTGCATCAAGAGGCTAATCGCCCTGATCCTCCAGCAGCGCGTACG
GTACTCCATGCTGTTGCTTTTCCTGCTCTCGATATTTTCGCATTACTACG
CCTGGTGGGCGTACATCAACTACTACAACGATGACTACTACAATCAGTGG
AACCACCAGCTCTTCTTCACGGTAACCGAGTTGTTTTCAACGGTCCTAGT
GATGCACCTGGCCAACACCACCAACGTGGTCACGCCAAAGAAAGTCTTCT
GCATTGTCGGCATCGCCCTGCTGCACATCCTGGCCAGCAGTTTTGATCAG
TTCTTCATGAATGTGGTGCGCGGCGAGGGTTACGCCCACCAGATAGTGCG
AGACATCGGGTTCATGGTGCCTGATCTTCTACAGCTCTTCGTCCCAGTTT
GGCTGCTACGACAGACACGTCGCGAATGTTATACCACGCGACCCTTCCAC
CGAGATCGGAAACTCCATCGGGATATTGTGTTGATGCTGTGCCTGGTGTC
GCTGCTCTTTGTCATCTGCACGGTTTGGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATATCATAATCATATCAT
ATCACACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGGATTCCCCACC
AATAAAAAACGCCCGGCGGCACGACGTCTGACATCCAGATGGAGTTCTGA
GTCATTACTGAATCTATCACAGGATCAGCGACCTCGAATTCCATACGCCC
GCCTGCCTTCA
UFO11789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9760-RD | 2039 | CG9760-RD | 338..1127 | 87..876 | 3950 | 100 | Plus |
| CG9760-RC | 2039 | CG9760-RC | 338..1127 | 87..876 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12159144..12159582 | 525..87 | 2195 | 100 | Minus |
| 3L | 28110227 | 3L | 12157964..12158327 | 876..513 | 1790 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:26:55 has no hits.
UFO11789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:22 Download gff for
UFO11789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9760-RC | 338..1133 | 87..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:54 Download gff for
UFO11789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9760-RC | 338..1133 | 87..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:13 Download gff for
UFO11789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9760-RC | 338..1133 | 87..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:13 Download gff for
UFO11789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12157958..12158318 | 522..882 | 99 | <- | Minus |
| 3L | 12159148..12159582 | 84..521 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:54 Download gff for
UFO11789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12151058..12151418 | 522..882 | 99 | <- | Minus |
| arm_3L | 12152248..12152682 | 84..521 | 99 | <- | Minus |
