UFO11791.5prime Sequence
1047 bp (926 high quality bases) assembled on 2012-06-28
> UFO11791.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCTTATTAAA
CATTCCTTGGAGTGGACACACTGGCCGCACGGCTTTTCACATTGTCATTT
TCCAGGAGCTAGGCGTTGAAAATTTGTTAAAAATGTCCCAATCAAAGGTT
CCTCATATTGTGGGCGATGATGATGAATATCAAGAAGCTACTGCTCCCGA
AAGTGACGAGATTACCTGCGAGTCTTCTGTGGAAAGTGATCAAGATGATG
ACTGTTCCAACGAAGATGATATGGATTTGGATGGGGCAGACTGGTCCCCA
TATGTCACTTATGAGGCGGGTACACCAAGACGTCCCCACAGTGCTTTGGA
GATTACCGAAATTACCGAGTTTCCGAAAATTCCAAAGAAAAACCCCACCT
CACCCGAACTGGTGATACAGAAGCCAGAGACTCCGGATCAAAACGACTCG
GGATCTCAGGAGCGTCTCACCTTCTCTCGCGCCAATAATGCGCTATCAGA
GTCCATTGGAGCTCGCGTTTCCCAACGTAGCAGGGGCAACTTGGAACCAT
TCATCCGTAGAATGGCACGTAGCCCTACGCCCGAGGCCTCAGAGGAAAAC
GGCTCGGTATCACAAGGTCAGCTGCTGGCCAAGCCCGTGGATGTCACCGA
GTTCTTTCACCGCATTGCTGTGGGTCTCGTCGAGCAGCGCGTCTGCTTGA
AGCCTTTCTTGGCATTGCGCAAACATATTGCTCAACTGGTGGGTCAGACT
TTGAAGAAATCCAAGAGGATGCGCCGTGCAAGCTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAGTGGTCATATCATATCATAATCATATCATATC
ACACTAGCCTAGAGATCTGTCATGACTAGTGCTGATCTCACATAAAAAAC
GCCGGCGGCACCGACGTTCTGACATCAGATGGAGTTCTGAGGTCATACTG
ATCTATCACAGGAATCAAGGGCTCGAATTCCAATACGCCCCGGCCTG
UFO11791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14932-RB | 808 | CG14932-RB | 1..730 | 98..827 | 3650 | 100 | Plus |
| CG14932-RC | 769 | CG14932-RC | 184..691 | 320..827 | 2540 | 100 | Plus |
| CG14932-RC | 769 | CG14932-RC | 1..183 | 98..280 | 915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11790483..11790933 | 377..827 | 2255 | 100 | Plus |
| 2L | 23513712 | 2L | 11789908..11790007 | 87..186 | 500 | 100 | Plus |
| 2L | 23513712 | 2L | 11790059..11790115 | 185..241 | 285 | 100 | Plus |
| 2L | 23513712 | 2L | 11790370..11790426 | 320..376 | 285 | 100 | Plus |
| 2L | 23513712 | 2L | 11790172..11790215 | 238..281 | 205 | 97.7 | Plus |
| 2L | 23513712 | 2L | 11790272..11790310 | 281..319 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:58 has no hits.
UFO11791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:22 Download gff for
UFO11791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14932-RB | 116..864 | 79..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:57 Download gff for
UFO11791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14932-RB | 27..775 | 79..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:14 Download gff for
UFO11791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14932-RB | 1..733 | 98..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:14 Download gff for
UFO11791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11789903..11790005 | 79..184 | 96 | -> | Plus |
| 2L | 11790059..11790115 | 185..241 | 100 | -> | Plus |
| 2L | 11790176..11790214 | 242..280 | 100 | -> | Plus |
| 2L | 11790272..11790310 | 281..319 | 100 | -> | Plus |
| 2L | 11790370..11790426 | 320..376 | 100 | -> | Plus |
| 2L | 11790483..11790936 | 377..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:57 Download gff for
UFO11791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11789903..11790005 | 79..184 | 96 | -> | Plus |
| arm_2L | 11790059..11790115 | 185..241 | 100 | -> | Plus |
| arm_2L | 11790176..11790214 | 242..280 | 100 | -> | Plus |
| arm_2L | 11790272..11790310 | 281..319 | 100 | -> | Plus |
| arm_2L | 11790370..11790426 | 320..376 | 100 | -> | Plus |
| arm_2L | 11790483..11790936 | 377..831 | 99 | | Plus |
