UFO11792.5prime Sequence
1109 bp (986 high quality bases) assembled on 2012-06-28
> UFO11792.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTCCATTAAGAT
CGAATTTGCAGTGCAGATGCGAAGAGGTGACGAATCCTATGCCGGTGCCC
TCCGTTCGGCGCTGGATGGGGTCGGCCAGGTGGAAATTGACACCCAGGAA
GGTCGAGTGATAATCCAAACCCAACGACCTTGGTCAGAGATTCAGGACAA
GATAGAAGCCACAGGTGTCCGGGCCGTACTCTCCGGATTCGGCGGACAGT
CGGCGGTGGCCCTTATTAACACAACAGGAAGTGTAGTGGACAAGACACCA
ATCCAGGGAGTGGTTCGGTTTACCACCATTACCGCAGACAAGAAGCCTGG
AGTGGTTGTGGATGGCGTTGTGGACGGTCTATCGCCTGGACTGCACGGAT
TACATATTCACGAGAGTGGTGACACTTCCGCAGGTTGCTCGTCGGTCGGA
GAACACTACAATCCCCGCCAGTCGCCACATGGAAGCCCTGCAGCTGGGGC
AGAGGAGCGGCACGCCGGAGATCTTGGCAACATCCGAGCGGATGAAAACG
GCAGGGCCACCTTTAGATTTGTGGATCCAGTGCTAGAGGTCTGGGACATA
ATCGGAAGGGCTGTCGTCCTAACAGCCAATGCCGATGACCTGGGACGCGG
GGGCAATGATCAGAGCCTGATTGACGGCAACTCTGGGGAAAGGATTGCGT
GTGGTATAATTGCTCGTTCGGCGGGCATCTTGGAAAACTTTAAGAGAATC
TGTGCATGTGATGGGGTCACACTTTGGGATGAACGCAATAAGCCACTGGC
TGGCAAGGAGCGCTCACAAAAGCTGGCAAGCTTTTCTAGACCATTCGTTT
GGCGCGCGGCCCAGGTAGTGGTCATATCATAATCATAATCATATCATATC
ACACTAGCCTAGGAGATCCTGGTCATGACTGTGCTTGATTCTCACCATAA
AAACGCCGCGCACGAGCGTTCTGAACAATTCAGATGGAGTTCTGAGTCAT
TTACTGAATCTATCACAGGGATCAGGCGAGCTCGAATTCAATTACGCCCG
CCTGCCACT
UFO11792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccs-RB | 890 | CG17753-RB | 51..842 | 84..875 | 3930 | 99.7 | Plus |
| Ccs-RC | 959 | CG17753-RC | 64..824 | 115..875 | 3775 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10121814..10122460 | 743..97 | 3205 | 99.7 | Minus |
| 2R | 25286936 | 2R | 10121621..10121755 | 875..741 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:01 has no hits.
UFO11792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:23 Download gff for
UFO11792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCS-RB | 32..837 | 76..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:58 Download gff for
UFO11792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 44..849 | 76..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:15 Download gff for
UFO11792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 44..849 | 76..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:15 Download gff for
UFO11792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10121614..10121753 | 743..883 | 97 | <- | Minus |
| 2R | 10121815..10122458 | 99..742 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:58 Download gff for
UFO11792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6009119..6009258 | 743..883 | 97 | <- | Minus |
| arm_2R | 6009320..6009963 | 99..742 | 99 | <- | Minus |
