UFO11793.5prime Sequence
1161 bp (1019 high quality bases) assembled on 2012-06-28
> UFO11793.5prime
GAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCAT
ACATTATACGAAGTTATCAGTCGACATGGCCGAACTGGACGATTTCTTCG
CGAAAAAGGACAAGAAGAAGTCCAAGAACAAGACTAAGTTCGTGACCGCC
GACGAGATGGTGAAGAACCTGGAGGACGGCACCAAGCGCGAGGTGGTCAA
GCCCAAAAAACCTGAGGTAGCCGCTGGCGGCGTGGCAGTAGTAGGCGAAA
ACGAGAATAGCGGCACCAAGGTGCCAGAGTCCGCCCCGCCCGTCGAGGAG
GAATGGAAGGAGTTCGAGGAGGAGCAGCGCAAGGACTACAGTGGCTTAAA
GATCGGCCAGCTGAGCACCATAACTGCCCAGGAAAGTTCCGAGTCGCAAG
CTGCTCGAGTGCCCTCTGCCCCGGACGGCGGCAACTACAATGAGGACGAT
GAGGACAGCAATGGGTATGACAACGCGGACGTAAACAAGGAGCGCGTCGG
CCACGGACCCTGGAAAAAAGTTGTCCCAGCCGAGGAGGTAATGCAGATTC
CGGTGCCCGTGGAGGTGGAAAAGCACTCGTCCAAGACCTACGTTTCACCC
GCGCTACGATACAGCCAGCAGGCCGGAAGTGGACTGGGAGGCGGCCCTAC
TGGGGGGGCATTGCGTCCACGACGCGCCGCCCCCGACATCACCAATACCG
AGTTTTTCCCAACACTAAGTGCGGCGCGTCCGGAGGAACAGCGCAAGAAG
AAAAACGAACCCGCCTTCGAAGAAGTCCGTCACGGAAGCCGGTTCCAGCG
TGTTCAGGAGTCCACGGCTGCCCCGGTGGCGGCCTCCAACCGATTCCAGT
CGCTTGACGACGAAGCAAGCGCAAGCTTTCTAGACCATTCGTTTGGCGGG
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGAATTCTCAACA
ATAAAAAAACGCCCGGCGGCAACGAGCGTTCTGAACAAATTCAGAATGGG
AGTTCTGAAGTCATTTACTTGAATTTATCAACAGGAGTTCCAAAGCGAGC
TCGATTTCAATTACCGCCCCCGCCCCCTGCATCATCGCAGATACTGTTGT
AATTCCAATAG
UFO11793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RC | 1240 | CG3760-RC | 201..996 | 75..870 | 3920 | 99.5 | Plus |
| CG3760-RB | 1128 | CG3760-RB | 89..884 | 75..870 | 3920 | 99.5 | Plus |
| CG3760-RD | 1039 | CG3760-RD | 89..881 | 75..870 | 3865 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24939271..24939525 | 616..870 | 1230 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24938970..24939217 | 368..615 | 1210 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24938460..24938673 | 75..288 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 24938759..24938842 | 288..371 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:27:05 has no hits.
UFO11793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:24 Download gff for
UFO11793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 119..917 | 69..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:01 Download gff for
UFO11793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 86..884 | 69..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:17 Download gff for
UFO11793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 86..884 | 69..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:17 Download gff for
UFO11793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24938457..24938673 | 69..288 | 98 | -> | Plus |
| 2R | 24938760..24938842 | 289..371 | 100 | -> | Plus |
| 2R | 24938974..24939217 | 372..615 | 99 | -> | Plus |
| 2R | 24939271..24939525 | 616..870 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:01 Download gff for
UFO11793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20825980..20826196 | 69..288 | 98 | -> | Plus |
| arm_2R | 20826283..20826365 | 289..371 | 100 | -> | Plus |
| arm_2R | 20826497..20826740 | 372..615 | 99 | -> | Plus |
| arm_2R | 20826794..20827048 | 616..870 | 98 | == | Plus |
