Clone UFO11794 Report

Search the DGRC for UFO11794

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:117
Well:94
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12164-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11794.5prime Sequence

1071 bp (939 high quality bases) assembled on 2012-06-28

> UFO11794.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGATCCCTAAGT
CTGTTGCTACTCAGCGCCAGCTGCGCGCTAATCATAAGCTTAGCCTACGC
CCATCCCCCCGAGGGAGTGTGGAAGAAGAAGCTCACCTGGAAGGAGGATT
GGGTCCAGGTGTGGAAGACCGTTAAGAAGGAGGCGTGGGAAACCAAGTGG
AAGAAGGTTTCGGTCCCAATATGGAAGGAAGTCAAGGTTCCCGTCTGGAA
GGAGGAGAAGGTTCCCGACTGGAAGATCGTAAAGAAGCCGAAAATTGAGG
AGAGAGAGGTGCCTGCCTGGAAGGAGGTTAAGGTGGCCGAATGGAAGAAG
ATAACGAAACCCATTTGGGTGCCCACAAAGGTCGCCGTCTGGAAGGAAAT
CCAGGTGCCCATTTGGAAGGAAGTGCAGGTCCCGTACTGGAAGGAAATAC
AAGTGCCCATTTGGAAGGAAGTACAGGTCGCAGACTGGAAGCAAATGTTT
GAGCCCCAATGGGTGAAAATGGGCATTCCCGGCGAAAAGTTCTTGGGTAA
GGACCACGAGGGCTGGGAGTACACCAGCCACGATCTCTGGCGCAAGAAGC
TGATCTGGAAGCCCGTGTGGAAGAAGGTCTGGCGCACCGAGAAGAAGCAG
GAGTGGAAGACCGAGAAGAAGCAGGAGTGGCGCACCGAGAAGAAGCACGA
ATGGAAAGACGGAGAAGTGCAGAGTGAAAGCAGACAAGAAGCTGGAGTGG
AAAGGACGAGTGGATCCAGGTGTGGAAGCCCGTGAAGAAACAAATCTGGA
TTAACGAGAAGCGCGAGACCTGATCGAGGAGAAGTTCAGATCTGGCGCAC
CGAGAGCGCCAGGTGTGGGCCACCGAGAGCGGCAGGCGTGAAGACGAGTG
CAGTCGTCACGTGCCCGTCTGAAGAGTCAGTGCAGATGAAAAGTGTGGAG
CCCGTCTGAAGTGTGGTGCATGAACATGCACGATGTCTCAGCTTCTAGAC
ATTCGTGGCGCGGGGCCAGTA

UFO11794.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12164-RB 1554 CG12164-RB 88..984 85..971 4100 98.1 Plus
CG12164-RA 1404 CG12164-RA 88..984 85..971 4100 98.1 Plus
CG12164-RB 1554 CG12164-RB 707..812 656..761 215 81.3 Plus
CG12164-RA 1404 CG12164-RA 707..812 656..761 215 81.3 Plus
CG15615-RB 1429 CG15615-RB 644..754 572..682 210 79.3 Plus
CG12164-RB 1554 CG12164-RB 432..501 477..546 200 87.3 Plus
CG12164-RB 1554 CG12164-RB 480..549 429..498 200 87.3 Plus
CG12164-RA 1404 CG12164-RA 432..501 477..546 200 87.3 Plus
CG12164-RA 1404 CG12164-RA 480..549 429..498 200 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7312506..7312889 562..940 1435 96.9 Plus
2R 25286936 2R 7312174..7312453 285..564 1400 100 Plus
2R 25286936 2R 7311931..7312113 106..288 915 100 Plus
2R 25286936 2R 7312648..7312722 656..730 210 85.3 Plus
2R 25286936 2R 7312328..7312387 487..546 195 88.3 Plus
2R 25286936 2R 7312376..7312435 439..498 195 88.3 Plus
2R 25286936 2R 16793966..16794028 634..572 195 87.3 Minus
Blast to na_te.dros performed on 2014-11-28 03:26:30 has no hits.

UFO11794.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:17 Download gff for UFO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 71..982 78..979 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:37 Download gff for UFO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 84..995 78..979 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:00 Download gff for UFO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 84..995 78..979 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:00 Download gff for UFO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7311932..7312111 107..286 100 -> Plus
2R 7312176..7312451 287..562 100 -> Plus
2R 7312507..7312938 563..985 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:37 Download gff for UFO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3199437..3199616 107..286 100 -> Plus
arm_2R 3199681..3199956 287..562 100 -> Plus
arm_2R 3200012..3200443 563..985 94 -> Plus