UFO11794.5prime Sequence
1071 bp (939 high quality bases) assembled on 2012-06-28
> UFO11794.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGATCCCTAAGT
CTGTTGCTACTCAGCGCCAGCTGCGCGCTAATCATAAGCTTAGCCTACGC
CCATCCCCCCGAGGGAGTGTGGAAGAAGAAGCTCACCTGGAAGGAGGATT
GGGTCCAGGTGTGGAAGACCGTTAAGAAGGAGGCGTGGGAAACCAAGTGG
AAGAAGGTTTCGGTCCCAATATGGAAGGAAGTCAAGGTTCCCGTCTGGAA
GGAGGAGAAGGTTCCCGACTGGAAGATCGTAAAGAAGCCGAAAATTGAGG
AGAGAGAGGTGCCTGCCTGGAAGGAGGTTAAGGTGGCCGAATGGAAGAAG
ATAACGAAACCCATTTGGGTGCCCACAAAGGTCGCCGTCTGGAAGGAAAT
CCAGGTGCCCATTTGGAAGGAAGTGCAGGTCCCGTACTGGAAGGAAATAC
AAGTGCCCATTTGGAAGGAAGTACAGGTCGCAGACTGGAAGCAAATGTTT
GAGCCCCAATGGGTGAAAATGGGCATTCCCGGCGAAAAGTTCTTGGGTAA
GGACCACGAGGGCTGGGAGTACACCAGCCACGATCTCTGGCGCAAGAAGC
TGATCTGGAAGCCCGTGTGGAAGAAGGTCTGGCGCACCGAGAAGAAGCAG
GAGTGGAAGACCGAGAAGAAGCAGGAGTGGCGCACCGAGAAGAAGCACGA
ATGGAAAGACGGAGAAGTGCAGAGTGAAAGCAGACAAGAAGCTGGAGTGG
AAAGGACGAGTGGATCCAGGTGTGGAAGCCCGTGAAGAAACAAATCTGGA
TTAACGAGAAGCGCGAGACCTGATCGAGGAGAAGTTCAGATCTGGCGCAC
CGAGAGCGCCAGGTGTGGGCCACCGAGAGCGGCAGGCGTGAAGACGAGTG
CAGTCGTCACGTGCCCGTCTGAAGAGTCAGTGCAGATGAAAAGTGTGGAG
CCCGTCTGAAGTGTGGTGCATGAACATGCACGATGTCTCAGCTTCTAGAC
ATTCGTGGCGCGGGGCCAGTA
UFO11794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12164-RB | 1554 | CG12164-RB | 88..984 | 85..971 | 4100 | 98.1 | Plus |
CG12164-RA | 1404 | CG12164-RA | 88..984 | 85..971 | 4100 | 98.1 | Plus |
CG12164-RB | 1554 | CG12164-RB | 707..812 | 656..761 | 215 | 81.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 707..812 | 656..761 | 215 | 81.3 | Plus |
CG15615-RB | 1429 | CG15615-RB | 644..754 | 572..682 | 210 | 79.3 | Plus |
CG12164-RB | 1554 | CG12164-RB | 432..501 | 477..546 | 200 | 87.3 | Plus |
CG12164-RB | 1554 | CG12164-RB | 480..549 | 429..498 | 200 | 87.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 432..501 | 477..546 | 200 | 87.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 480..549 | 429..498 | 200 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7312506..7312889 | 562..940 | 1435 | 96.9 | Plus |
2R | 25286936 | 2R | 7312174..7312453 | 285..564 | 1400 | 100 | Plus |
2R | 25286936 | 2R | 7311931..7312113 | 106..288 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7312648..7312722 | 656..730 | 210 | 85.3 | Plus |
2R | 25286936 | 2R | 7312328..7312387 | 487..546 | 195 | 88.3 | Plus |
2R | 25286936 | 2R | 7312376..7312435 | 439..498 | 195 | 88.3 | Plus |
2R | 25286936 | 2R | 16793966..16794028 | 634..572 | 195 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:26:30 has no hits.
UFO11794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:17 Download gff for
UFO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 71..982 | 78..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:37 Download gff for
UFO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 84..995 | 78..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:00 Download gff for
UFO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 84..995 | 78..979 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:00 Download gff for
UFO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7311932..7312111 | 107..286 | 100 | -> | Plus |
2R | 7312176..7312451 | 287..562 | 100 | -> | Plus |
2R | 7312507..7312938 | 563..985 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:37 Download gff for
UFO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3199437..3199616 | 107..286 | 100 | -> | Plus |
arm_2R | 3199681..3199956 | 287..562 | 100 | -> | Plus |
arm_2R | 3200012..3200443 | 563..985 | 94 | -> | Plus |