UFO11795.5prime Sequence
1106 bp (1009 high quality bases) assembled on 2012-06-28
> UFO11795.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGGGACTTTTAC
CCCGCTGTTCTTCGTCTTTCTGCGGAAGAATTTGCTCTACTTGCAACGCA
ACTTGCTGCCCCTGCTCCTTATCTGCTCCGGATTTGCCGGAGTACTCACC
GCGTACCTCCACTGGTCCGTCAAGCCCGTGCTTCACCAAATTAACCAGTT
TGAAGCAAAGAATGAAATGGTTCTTAGAGAATTGTACTTTCCCGGTAATG
AGCTGGATTACATTTACTACTCACCCATCTCTCCCAATGTAGAGGACATT
ATGGATCTCCTGCGTGTAGATCTGGGAATTATACCAGAGCGACTTCGGCC
CAACAACAACAGCTTCGAGATGCAGCTGGAGATGGAGCAACAGTGCCGTG
GAAGCTGCTTCGCAATTGACTTCCACCGGGTACCGAACCGTGGCTCTGAC
AGAAAGTTCCGATACAGCCTCAGCTCAAATCAGATGCGCATTTCGCCCAG
AAAGCGATTTGTGAACGACGAGGAAATTTATCACCAGATAGATGATGATG
ATTATATTCGTTCCGGATTCCTGTCCTTGCAACACATATTGGACAAACAG
TATATGAAATACCAGGAGCTCGGGAAAGACTTTGAGGTGGTGGTCAGCTC
GATGCCCAACATGGAGGTCATCAGCATGGATAGTCATCGATTGACATATT
TCGGAACACTGTGCAGCATTCTATTCAATGTGGTCCTACTAAGCAGCTTT
GTGGTGCCCTTTGTGGAGGAGAAGCAAAACGGACTGAAGGAGTTTCTCAA
CCTGGTCACGCCCATGAGTTTCCTCAACGGCCTCACTTTCTTTCTCATTC
GGTTTGTGTGCTACACATTGCTTATGATCTTGTCCTGTCGTTGCATATTT
ATACAGCCCTGGGCTCATCTGCTTTGCTTACGTGCAGTGTTGTTTCTGCT
TTACATTTTGTCACAATGTCGTATGCTTATCTGATCTCTATTGCTCCACT
CAGTTTCTATGCCAATCGAGCTGCATGCTATAATCCTATGCATTTCTCAT
TGTTTC
UFO11795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31731-RC | 1589 | CG31731-RC | 87..1075 | 84..1062 | 4690 | 98.9 | Plus |
| CG31731-RB | 5141 | CG31731-RB | 87..1075 | 84..1062 | 4690 | 98.9 | Plus |
| CG16890-RD | 1184 | CG16890-RD | 1..53 | 252..200 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13785049..13785508 | 590..1042 | 1970 | 98.3 | Plus |
| 2L | 23513712 | 2L | 13784786..13784986 | 391..591 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 13784170..13784352 | 84..266 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 13784471..13784595 | 267..391 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:33 has no hits.
UFO11795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:18 Download gff for
UFO11795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RC | 76..1073 | 76..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:39 Download gff for
UFO11795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RB | 81..1078 | 76..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:01 Download gff for
UFO11795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RB | 81..1078 | 76..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:01 Download gff for
UFO11795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13784786..13784986 | 391..591 | 100 | -> | Plus |
| 2L | 13784164..13784352 | 76..266 | 97 | -> | Plus |
| 2L | 13784471..13784594 | 267..390 | 100 | -> | Plus |
| 2L | 13785051..13785521 | 592..1053 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:39 Download gff for
UFO11795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13784164..13784352 | 76..266 | 97 | -> | Plus |
| arm_2L | 13784471..13784594 | 267..390 | 100 | -> | Plus |
| arm_2L | 13784786..13784986 | 391..591 | 100 | -> | Plus |
| arm_2L | 13785051..13785521 | 592..1053 | 97 | -> | Plus |
