UFO11796.5prime Sequence
924 bp (252 high quality bases) assembled on 2012-06-28
> UFO11796.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAATCCACATGCTTTTGGCCAATTG
CGTCCTTTTCTTGGTCCTGCAGGTATTATCCTGCCACGGCGAGTTCTTCA
GTTCCACCTCGGGCCTGGCAAAGCTGTTCGAAACGGAGGTCGTCCTCCTG
GCAGAGCTGCAAAATTATGTGAATGAAATTAACCAGCACGCTGAGGCGCT
ACAGAGTGAGATCGATGCCATCCGCGTGGAGCACCTGAATGCCGCCGATG
GAATCGATGACTACCTCAACAATCCGGTGAACGCGTTCCGGCTGATAAAA
CGCCTTCACAGCGATTGGGAAACCTTCGAGGGCAGTGTTACGGCGGATTC
GAGTCGCTCAAACTATCTAGATACCATGGCGAGTCTTAAGGATAATCTGA
GCTTTCCTTCTCAGGACGATTTTGTGGGATCGGCGATAGCTCTTACGCGA
CTTCAGCAGACTTATCAATTGGATGTGGCTGAGCTGGCCAGTGGAATCCT
GAATGGCGTTAAATATGGTACGGCCATGTCTTGTCAGGATTGTTTTGTCC
TTGGGCAGCACCTGTATGCGCTGAGACATTACAACCACACCGTGCCATGG
CTGCACAGTCGATGCAGATGCTCGGAGAACAGTCCTACGGGTCGGAGTCC
GTATCCCTATACTTTATGTAGGCAGTGATGGAATATCATCGCGACTTGTT
GCCCACGAAAGTGCCCTGAGTCTGGTGAACCATGAGCTTTCCATAGAACC
AGACCATAGGAGTCACCTTCTGGAGGCTCGTCAGCAACTGGAGGAGCTAT
CACGGATGGTGACTAGATCGGTTGCTTCACTTGACACCCCAGACCTGAAA
CTACCATGAGTCCCAGGAGTTTCG
UFO11796.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaMP-RA | 1882 | CG9726-RA | 66..913 | 84..924 | 3670 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30492897..30493260 | 924..568 | 1130 | 91.2 | Minus |
| 3R | 32079331 | 3R | 30495916..30496088 | 256..84 | 850 | 99.4 | Minus |
| 3R | 32079331 | 3R | 30493852..30494008 | 411..255 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30493624..30493780 | 568..412 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:26:37 has no hits.
UFO11796.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:18 Download gff for
UFO11796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 63..910 | 84..924 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:42 Download gff for
UFO11796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 66..913 | 84..924 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:04 Download gff for
UFO11796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 66..913 | 84..924 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:04 Download gff for
UFO11796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30492897..30493259 | 569..924 | 91 | <- | Minus |
| 3R | 30493624..30493780 | 412..568 | 99 | <- | Minus |
| 3R | 30493852..30494006 | 257..411 | 100 | <- | Minus |
| 3R | 30495916..30496088 | 84..256 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:42 Download gff for
UFO11796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26318619..26318981 | 569..924 | 91 | <- | Minus |
| arm_3R | 26319346..26319502 | 412..568 | 99 | <- | Minus |
| arm_3R | 26319574..26319728 | 257..411 | 100 | <- | Minus |
| arm_3R | 26321638..26321810 | 84..256 | 99 | == | Minus |
