UFO11801.5prime Sequence
1114 bp (992 high quality bases) assembled on 2012-06-29
> UFO11801.5prime
CAGTCGACATGGACGAAATCCTCTTTCCCACGCAGCAAAAAAGCAACTCC
CTAAGCGACGGCGACGATGTCGACCTGAAATTCTTCCAGTCGGCCTCCGG
CGAGCGGAAGGACAGCGACACCTCGGATCCGGGAAACGATGCGGATCGTG
ATGGCAAGGATGCGGATGGGGACAACGACAACAAGAACACGGACGGAGAT
GGTGACTCTGGCGAGCCGGCGCACAAAAAGCTCAAGACGAAGAAGGAACT
GGAGGAGGAGGAGCGCGAACGAATGCAGGTTCTCGTTTCCAACTTTACGG
AAGAACAGCTGGATCGCTACGAAATGTATCGTCGCTCTGCCTTTCCCAAG
GCCGCCGTCAAGCGTCTAATGCAAACTATCACCGGCTGTTCCGTGTCCCA
GAATGTTGTGATAGCCATGTCCGGCATTGCGAAGGTCTTCGTCGGCGAGG
TTGTGGAGGAAGCCCTCGACGTGATGGAGGCCCAAGGTGAATCCGGTGCC
CTGCAGCCCAAATTCATACGAGAGGCAGTGCGACGACTGAGGACCAAGGA
TCGGATGCCCATAGGCAGATACCAGCAGCCCTATTTCAGACTGAACGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGCATCAGCACTTGTCGC
TTGCGTATATATTTGCCCATGTGAAACGGGCGAGAGTTGTCCATTATTGC
CACGTTTAAATCAAACTGTGAACTCACCAGGATTGCCTGAAACGAAAACA
ATATTCTCAATAACCCTTAGATAGGCCAGGCTCACGTAACGCCAACTTGC
AATATGGTAGACTG
UFO11801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf11-RA | 777 | CG4079-RA | 89..676 | 9..596 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9762525..9762843 | 596..278 | 1595 | 100 | Minus |
| 2L | 23513712 | 2L | 9762905..9763174 | 278..9 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:15 has no hits.
UFO11801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:44 Download gff for
UFO11801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf11-RA | 64..662 | 1..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:07 Download gff for
UFO11801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf11-RA | 82..680 | 1..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:23 Download gff for
UFO11801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf11-RA | 82..680 | 1..602 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:23 Download gff for
UFO11801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9762521..9762843 | 278..602 | 99 | <- | Minus |
| 2L | 9762906..9763181 | 1..277 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:07 Download gff for
UFO11801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9762521..9762843 | 278..602 | 99 | <- | Minus |
| arm_2L | 9762906..9763181 | 1..277 | 98 | | Minus |
