UFO11802.5prime Sequence
1125 bp (983 high quality bases) assembled on 2012-06-29
> UFO11802.5prime
CAGTCGACATGTGCGAAAAGGTCACCGCGCGCTGCACTTGGCCCCAGCTG
TCGGGCAACGGGCTGGACCAACTGGTGGCCACCCGCTTGTCCGACGAAGA
CGTCTTTGTGAAGCCCGACTTGGACGACGTGATCGACGAGAATCGCGCCG
TGCTGTTTTCCATGCAGTCGGCGGATCCGCCGCCGCCTTGTGAGCTGCGC
TTCCAGATCCCGAACCGCTTCAAAATCGCCGCGCTCACCCTGATTTGCAG
CGCTCCCAAGGTGGAGCTGTTCATTGGACCCTTGCAGGAGTACTGCGAGA
CCATCTACGGCACTTGCGTCGACGATGAGGACCCAGAGGTTGCGGTGCGA
CCCTATCGCTATGACATGGAAATCGACCGATCCGGGATAAATGACATAAA
CCTGAAGATGCTCACCTCGGCCAGCGAGATCTGCGTTTACGGAGCCCTGC
TCCAGGTGGCGCCGAATCCCAACGGCATAACCACCCAGTTGCCCAGGCCA
ATGGATGCGCAGCGAATCCAAGAGCTGCTGCAAAGGGGTGGCACGAGTCC
CTTGAAGAAGGAGGAGCAGGCCGAAAAGTTCGAGCAGTTCATGAGCCTGA
TGAAGGGCTATTCCCCGCAGGCGAAGGACCAAACCCAAGAGACTGCACCG
CCTTCCACCGATGTTGCAATCCTCAAGGAGCACATCGACATGAGATTTGA
GAAGCTGACGCTGTTAGTGTCTAAGAGACTGGACAACTTCGAGGCCCAGC
AGACGGAAAAGTTAAACAAAATTATTGCCTTGCTGGAAAAGGAAAAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCTATCATATCATATCACACTAGCTAGAGTCTGTCATGACTAGT
GCTGATTCTCACATAAAACGCCGCGCACGACGTTCTGAACAATCAGATGA
GTCTGAGTCATTACTGATCTATCACAGGATCAAGCGAGCTCGAATCAATA
CGCCCGCCTGCATCATCGATATGTGATCTAGCTCCGCATGACTCAACGTT
AACTGTCCAGTAACTGCTTGTATTGCTGACGCATGCATGCTTAATGATCA
TTGAAATTCACTGACGTCACTGATG
UFO11802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11882-RB | 1018 | CG11882-RB | 49..838 | 8..797 | 3950 | 100 | Plus |
| CG11882-RA | 1087 | CG11882-RA | 118..907 | 8..797 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29147196..29147880 | 797..113 | 3425 | 100 | Minus |
| 3R | 32079331 | 3R | 29147950..29148055 | 113..8 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:18 has no hits.
UFO11802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:45 Download gff for
UFO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11882-RA | 118..911 | 8..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:09 Download gff for
UFO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11882-RA | 118..911 | 8..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:25 Download gff for
UFO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11882-RA | 118..911 | 8..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:25 Download gff for
UFO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29147192..29147880 | 113..802 | 99 | <- | Minus |
| 3R | 29147951..29148055 | 8..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:09 Download gff for
UFO11802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24972914..24973602 | 113..802 | 99 | <- | Minus |
| arm_3R | 24973673..24973777 | 8..112 | 100 | | Minus |
