UFO11803.5prime Sequence
1131 bp (1015 high quality bases) assembled on 2012-06-29
> UFO11803.5prime
CAGTCGACATGAGCGGAAAGATGGTCTTCATTGTGCTCGTCGCCGTGTTG
GGCTCCACTTTTGCCCAGGAGCAGCCCTACTACCTGCAACAGTGCCCACG
GGACGAGGCCCAGATAAACGAATGCCTTCGCGAAAGTGGCAACAAGCTGG
TGCACTACCTGCAGAAGGGAGTGCCGGAGTTGGACATCTATGAGATCGAA
CCCGTGATGATTGATGAAATCGGCATTGTGTTGGGCAGTGGTCCGGATGG
CTACCGCGCACTTTTCCGGAACATTCAGGCCTACGGTGTGAGCAATATCA
CAGTGACCAACATCCGCTCCGACTTGGACTCGCTGCAGTTCCAGCTGACG
TGCGAGATACCCCGCATTCGCGTCAAGGCGCAGTACCGGTCCACAGGTGT
TCTGATCTTGGTGAAGGCCTCCGGAGCCGGCGACTACTGGGGGGAGTACG
AGGGAGTTAAGGCCAAGATCTACTTCAAGGCGGTGGCCAATGAGGGTCCC
GACGGTCGCACCTACCTGACGACGGACTCCGTCAAGATGGACTTCAACGT
GAAGGAGATCCAAATGGGTGTGGACAACATCGCCAATGGCAACACAGTGA
TACAGGCTGCTCTCAATCTGTTCATCAACTCCAACTCCCAGGAGCTGCTC
AAGGAAATGAAGCCGGCGCTCAGGACCAAACTCACTCTGGTCATCCGCAA
CTTCATGGATCGCATATTCGCCAAGATTCCGCTGGACGAGTGGATCAACC
TGAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTTCACAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTCATTACTGA
TCTATCAACAGGAGTCAAGCGAGCTCGATATCAAATTACGCCCCGCCTGC
ACTCATCGCAGTACTGTTGTAATTCATAAGCATCTGCCGAACTTGAAGCA
TCACAAAACGCATGAATGAACTGAATCGCCAGCGCCATCAGCACTTGTCG
CTGCGTATAAAATTGGCCAATGGTAAACCGG
UFO11803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2016-RD | 1211 | CG2016-RD | 392..1138 | 9..755 | 3735 | 100 | Plus |
| CG2016-RB | 873 | CG2016-RB | 54..800 | 9..755 | 3735 | 100 | Plus |
| CG2016-RE | 888 | CG2016-RE | 54..815 | 9..755 | 3575 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4957290..4957443 | 603..450 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 4957072..4957223 | 755..604 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 4957501..4957635 | 450..316 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 4959637..4959760 | 316..193 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 4959904..4960022 | 194..76 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 4960894..4960960 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:23 has no hits.
UFO11803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:46 Download gff for
UFO11803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 51..797 | 9..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:12 Download gff for
UFO11803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 54..800 | 9..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:27 Download gff for
UFO11803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 54..800 | 9..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:27 Download gff for
UFO11803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4957072..4957223 | 604..755 | 100 | <- | Minus |
| 3R | 4957290..4957442 | 451..603 | 100 | <- | Minus |
| 3R | 4957501..4957634 | 317..450 | 100 | <- | Minus |
| 3R | 4959637..4959758 | 195..316 | 100 | <- | Minus |
| 3R | 4959904..4960022 | 76..194 | 100 | <- | Minus |
| 3R | 4960894..4960960 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:12 Download gff for
UFO11803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 782794..782945 | 604..755 | 100 | <- | Minus |
| arm_3R | 783012..783164 | 451..603 | 100 | <- | Minus |
| arm_3R | 783223..783356 | 317..450 | 100 | <- | Minus |
| arm_3R | 785359..785480 | 195..316 | 100 | <- | Minus |
| arm_3R | 785626..785744 | 76..194 | 100 | <- | Minus |
| arm_3R | 786616..786682 | 9..75 | 100 | | Minus |
