UFO11808.5prime Sequence
1118 bp (896 high quality bases) assembled on 2012-06-29
> UFO11808.5prime
CAGTCGACATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCC
TTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGCCAAAGCTGGTAT
GTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGC
GCAAGGATTGTCTTTTGAAGGCCATCGACTGTTACGAAAACAACAAGTCA
TGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAAGA
AACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTC
TCTACCAGCAACATGGTTCGCCGGAAGCAGCAGCTGCTGCTCTCGATAAA
GCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTA
CAAACGCGCCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCAT
CGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGACTCAAAAAATAT
GAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGAC
AAAGTCTTACGGACAAGTTGGCCGTTTAGTAGTTGCTTTAATACTGGTAC
AATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAAATG
GGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAACCTACTCA
AAGCTTTTGACGACGAGGATCCTGAGCTGGCCCCCAAAGATGCTGGCATC
TCCATTCATAAGACACATGGACGTGGAGTACGCACCTTTTATCTAAAGAT
GTGCCATTACCAAAAGGAATTCGTCAAATGACCAAAATGCATTCGACAAT
GCCCGCAAACGCAAGCTTTTCTAGACCATTCGTTTGGCGCGCGGGCCCGG
TTAGTGGTCATAATCATAATCATAATCATAATCATTATCACACTAGCCTA
AGAAAATTCTGGTTCATGACTATGTGCTTGGATTCTCCACCAATAAAAAA
CGCCCGGCGCAACCGAGCGTTTGAACCAATCCAAATGGAGTTCTGAGAGT
TCATTATCTGAATCTACAACAGAATTCCAAGGCAAGACTCGAATACATTT
ACGCCCCGACTTGGCCCA
UFO11808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap2-RA | 1002 | CG6208-RA | 27..875 | 9..860 | 4095 | 99.1 | Plus |
| gammaSnap1-RA | 1117 | CG3988-RA | 190..870 | 101..783 | 665 | 73.7 | Plus |
| sei-RC | 3197 | CG3182-RC | 154..375 | 726..504 | 235 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10120532..10121374 | 853..9 | 3985 | 99.2 | Minus |
| 2R | 25286936 | 2R | 24047575..24047852 | 783..504 | 280 | 75 | Minus |
| 2R | 25286936 | 2R | 24048335..24048454 | 230..111 | 255 | 80.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:33 has no hits.
UFO11808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:48 Download gff for
UFO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 20..887 | 1..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:18 Download gff for
UFO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 20..887 | 1..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:32 Download gff for
UFO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap2-RA | 20..887 | 1..870 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:32 Download gff for
UFO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10120514..10121380 | 1..870 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:18 Download gff for
UFO11808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5946236..5947102 | 1..870 | 98 | | Minus |
