UFO11809.5prime Sequence
1102 bp (968 high quality bases) assembled on 2012-06-29
> UFO11809.5prime
CAGTCGACATGAAAACAGCTATCATTCTGCTTATAGCCCTTGGGGCATGT
GCTGCTGAGCCTTCTCCCCGAACTCTAAACTCATTTTGCTCTTACTTAGA
CGATGGAAAGGAAACTGTTTCGAGTCTGGGCAACACCAAGAAGTGTTTTG
CTCGTTACCTACCGGAACTGGAAAGTGAAGGGGCTACCTGGTCGCAAGGA
TATAATGCCTGTCAGAAGATTACCATTAACGAGCGGCTGTCCTTGCTAAC
GGATGCCACTGAGGCTCAGGAGGAGATTCGAGAGGCTGCCCTGGGCATAT
CATCATTTATTGATCAGTGTTTGGTCCTGACGGAGGCCGTGGACTTTTTC
AACTGCTTTGCCAAAATGGCTAAGTTACAGTTGGCGAATGTCTACAGTAT
ATCATTTAATGCCACCGAGCAGGTTTTAATCCTAAATAAGAAATTAAGTA
GAATCGAATTGGAGCACTATCGCTGCACAAATCAAACCGAACAAAATTAT
GTCAAAGGAACCAATACAATCTTTCGATCTTTGGATCAGTGTCTGCAGCA
AAATGATACACACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAACCGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCCGCCTTGCGTTATATATTTGGCCATGGTGAAAACC
GGGGCGAGAGTGTCAATATGCCACGTTTAAATCAAAACTGTGAACTCACC
CAGGTTGCTGAACGAAACATATCTCATAAACCCTTTAGGAATAGCCAGGT
TCACCGTACCACGCCCCAATCTGCCTAAATTTTTGTGTAAACTGCCGATC
GC
UFO11809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34005-RC | 633 | CG34005-RC | 27..582 | 8..563 | 2765 | 99.8 | Plus |
| CG34005-RB | 694 | CG34005-RB | 27..582 | 8..563 | 2765 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18048222..18048547 | 44..369 | 1630 | 100 | Plus |
| 2R | 25286936 | 2R | 18048602..18048797 | 368..563 | 965 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18048134..18048171 | 8..45 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:27:37 has no hits.
UFO11809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:49 Download gff for
UFO11809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34005-RB | 17..584 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:21 Download gff for
UFO11809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34005-RB | 21..588 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:34 Download gff for
UFO11809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34005-RB | 21..588 | 1..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:34 Download gff for
UFO11809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18048603..18048803 | 369..571 | 97 | == | Plus |
| 2R | 18048128..18048170 | 1..44 | 95 | -> | Plus |
| 2R | 18048223..18048546 | 45..368 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:21 Download gff for
UFO11809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13935633..13935675 | 1..44 | 95 | -> | Plus |
| arm_2R | 13935728..13936051 | 45..368 | 100 | -> | Plus |
| arm_2R | 13936108..13936308 | 369..571 | 97 | == | Plus |
