UFO11810.5prime Sequence
1138 bp (975 high quality bases) assembled on 2012-06-29
> UFO11810.5prime
CAGTCGACATGTATGACCAGGTGATATTCACAGCTGAACTCTTGCACCAC
AGAACTGTGGGCAGCCAAATCGAGGAGACACGGCGCCATTGGGAGGAGCG
GTGCTCTTGGTTTCCGGCTGCCCAAAGGAATATGGCATCAAGGTGTTCAG
AAATTTACAAGGAGAGTCTTGAAAAATACGGCAACGATTACTACGAGTTC
TATGCCAATAGGAATCGTCTGAAGGAAGAACACAGAGTTAATACCAAGTC
TTATAAACGTCGGGAAAGAAGAAGGTCCCACAGGCCAATGGACCACTTAA
AAGACTATAGGGTGTCACCAACTTCAAACGGGGAGTACGGAAGTGTTCGG
CCAATGCTTCTCCTTCAATGGCTTGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCGGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCCTTTAGGGAAATAGGCCAGGTTTTCCCCGTACACGCCACA
TCTTGCGAATATATTGTGTAGAAACTGCCGGAAATTCGTCGTGTATTCCC
CTCCAGAGCGATGAAACGTTCAGTTTGCCTCATGAAAACGGTGATGAAGG
TGAACACCTATCCCATATCCACCAGCCTCACCGTTCTTTCATTGCATACG
AAATTCCGGATGACATCTCAGCGGCATGATGTGATTAATCGATAACCTGT
GCCTATTTTTCTTTACCGGCCTTAAAAGCCGATATATC
UFO11810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIa-RE | 4457 | CG12621-RE | 2819..3184 | 9..374 | 1830 | 100 | Plus |
| CG34106-RB | 4457 | CG34106-RB | 2819..3184 | 9..374 | 1830 | 100 | Plus |
| CG34106-RA | 556 | CG34106-RA | 69..434 | 9..374 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17171480..17171845 | 9..374 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:27:08 has no hits.
UFO11810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:43 Download gff for
UFO11810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RA | 67..439 | 1..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:04 Download gff for
UFO11810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RA | 62..434 | 1..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:20 Download gff for
UFO11810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RA | 62..434 | 1..374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:20 Download gff for
UFO11810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17171473..17171845 | 1..374 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:04 Download gff for
UFO11810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17171473..17171845 | 1..374 | 99 | == | Plus |
