UFO11811.5prime Sequence
1156 bp (1036 high quality bases) assembled on 2012-06-29
> UFO11811.5prime
CAGTCGACATGCACAGAATGCTGCTCTACACTTTGGTAATCGTTGCCCTT
GCTTTGGTTCAGGCCTGCCAAATCCATCATAATCTGACATTTCCTGCTGT
GGACCAAGTTTCCGACTGTTCTGGCCACTACCTCACTTTTGGTAATCGGA
GTTTGACAAGGGATCTGCCCACATTAACCCCAGGCAATTCGATGTCATCT
CGGCTTGAACTTTGCTTTTATGGCAAACCTTTTACGCTGGGGCATGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTTCAGTTTG
CTCATGGAAAACGGGGTAACAAGGGTGAACACTATCCCATATCACCAGCT
CACGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGC
AGAATGTGAATATCGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGT
TCTTTAAAAAGGCCGTAATATCAGCTGAACGGTCTGGTTAATAGGGTACA
TTGGAGCACTGACTGAAATGCCCTCAAAATGTTCTTACGATTGCATGGAA
TATATTCAACGGTGTATATCCAGGTGAATTTTTCTCTCCAATTTTAAGCC
TCTCTC
UFO11811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42718-RA | 351 | CG42718-RA | 52..290 | 7..245 | 1195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16320891..16321116 | 245..20 | 1130 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 815..883 | 126 | 66.7 | Plus |
UFO11811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:44 Download gff for
UFO11811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42718-RA | 47..294 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:05 Download gff for
UFO11811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42718-RA | 47..294 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:22 Download gff for
UFO11811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42718-RA | 47..294 | 1..251 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:22 Download gff for
UFO11811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16320891..16321115 | 21..245 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:05 Download gff for
UFO11811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16313991..16314215 | 21..245 | 100 | <- | Minus |
