UFO11816.5prime Sequence
1084 bp (958 high quality bases) assembled on 2012-06-29
> UFO11816.5prime
CAGTCGACATGGCTGCCACCGATATCGCCGAGGAGGCCTTTCACTTGCGC
CTGGGCTATCTGAAGCCGGAGACCGTGGAAATCGCCCGTGTGGAACTCCG
CGAAACCGAAGAAGTCAAGGCGGAGGCCATCATCAAGCTACGGGAACTGC
TCAAGGCCACGCCCGAGCTGAACTACAAGGATGACGACGCTTTCCTCACA
GTTTTCCTGCGCGCCTGCCACTTTTATCCCGAAGGAGCTCTGGAAAAGAT
GAAAACCACAGCCAGCTTCCGCAAGGAGTACGCCTCTCTGGTCCGCGGAC
TCCTGGTCGAGCAGGTTAAGGAGAAATTCGTGAAGGGCAGTGTGATCAAT
GTGCTCAAGAACTGCGACCAGAAGGGTCGTCGTGTGCTCATCGTGAACTG
TGGCAAACTCTGGGATCCCAGCGATATTACCAGCGATGAGATGTTCCGCA
TGCTCTACATGGTACATCTCGCCGCCCAGCTGGAGGAGGAGACCCAGGTG
CGGGGCGTGGTCTGCATCATGGACTTCGAGGGACTGTCGATGAAACAGGT
GAAGGCCCTGTCGCCGAGCTTCTCCAAGCGATTGCTCACATTCATCCAGG
AGGCGATGCCCCTTCGCATGAAGGAGGTGCACTTCGTGAAGCAGCCGTTC
ATCTTCAACATGGTTTGGTCGCTCTTCAAGCCCTTCGTCAAACAAAAGCT
GAACAATAGGATGCACTTCCACGGCAGTGACATGAAGTCGTTGCAGAAGT
TCCTCGACCCCTCCGTCCTGCCCGCCAACTACAAGGTTACTCTGCCCGCG
ATCGACTACGGTGGCGTCGAGTGTTTCCCCGCTTCTGGAGCAGCAGGCCC
AGTATGTTGAGGAGTGGAGCCAGCTTGGCCCTGCCCAGTGGGCAAGCTTT
CTAGACCATTTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCCTTAATCATAATCACACTTAGCCTAGGAGATCCTGTTCATG
ACTAGGTGCTTGGAATTCTCACAATAAAACGCCCGGCGCAACGAGCGTTC
TAACAAATTCGAATGAGTTCTGAGTCATTTCTGA
UFO11816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5958-RA | 1174 | CG5958-RA | 147..1028 | 9..891 | 4345 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7431079..7431542 | 710..247 | 2320 | 100 | Minus |
| 2L | 23513712 | 2L | 7432937..7433176 | 248..9 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 7430676..7430856 | 891..710 | 815 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:27:57 has no hits.
UFO11816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:53 Download gff for
UFO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 107..992 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:35 Download gff for
UFO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 143..1028 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:46 Download gff for
UFO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 143..1028 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:46 Download gff for
UFO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7430676..7430855 | 711..891 | 97 | <- | Minus |
| 2L | 7431079..7431540 | 249..710 | 100 | <- | Minus |
| 2L | 7432937..7433180 | 1..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:35 Download gff for
UFO11816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7430676..7430855 | 711..891 | 97 | <- | Minus |
| arm_2L | 7431079..7431540 | 249..710 | 100 | <- | Minus |
| arm_2L | 7432937..7433180 | 1..248 | 98 | | Minus |
