UFO11818.5prime Sequence
1130 bp (998 high quality bases) assembled on 2012-06-29
> UFO11818.5prime
CAGTCGACATGACTTTTGCAAGGTGGAACTGGACTATTTTCCCGTGTATG
ATCCCGACGAGCTTTCCAATCTGGATGCGAATCTTTCAAAGCCGGGCAAT
AGCACAAAACGCTCATATTATTCACCGCATCCTGAGGCCAGAAGGTCGAA
TAGAACCGCTGAAAAACAATTTGTCAAAGATGTTCAACTACGATATTCTC
ATGGCTTACAACTGCGACGGTGAGCTCTCAGTCAGCAGTCAGTCATCTCA
TACAAATATATTAACGAAACTATTTTTGGGGTCCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT
GTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGG
TGTAACAAGGTGACACTATCCCATATCACCAGCCTCACCGTCTTTCATTG
CCATACGAAATTCAGATGAGCATTCATCAGCGGCAGATGTGAATAAGGCG
ATAAACTGTGCTTATTTTCTTTACGTCTTTAAAAGCGTATTTCAGCTGAC
CGTCTGGTTAAGTACATGAGCACTGACTGAATGCCTCAATGTTCTTTACA
GCATGGAATATCACGTGATCAGGATTTTTT
UFO11818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17977-RA | 966 | CG17977-RA | 212..487 | 9..284 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8067125..8067293 | 279..111 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 8067342..8067444 | 111..9 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:28:05 has no hits.
UFO11818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:55 Download gff for
UFO11818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17977-RA | 209..488 | 9..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:39 Download gff for
UFO11818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17977-RA | 212..491 | 9..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:49 Download gff for
UFO11818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17977-RA | 212..491 | 9..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:49 Download gff for
UFO11818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8067125..8067293 | 111..279 | 100 | <- | Minus |
| 2R | 8067343..8067444 | 9..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:39 Download gff for
UFO11818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3954630..3954798 | 111..279 | 100 | <- | Minus |
| arm_2R | 3954848..3954949 | 9..110 | 100 | | Minus |
