UFO11819.5prime Sequence
1117 bp (1000 high quality bases) assembled on 2012-06-29
> UFO11819.5prime
CAGTCGACATGGCCGATGATGAAGATAAACCAAAGAAGCACACGCTGGAC
AGCCTGTTCTTGGTGTATTCCAACTTCCAGGTCATACCCACCGACATCGA
GAACGAGTACTTTGACAGCATACTCCTCTCGCAGTTGGACGCCTGGCTAG
AGCAGGCCAAGCTCATGCCCAATCCCATAACTCGAACTCAGACCGGTTTA
ATATACATGCGATACAAGAAATGGCGTTTGGAGTACGAAGACTTTCTCGA
GGTCCTAAATAACTTGGCATCCGATAACAATCTGGCTATAGATGAAATGA
AGCAAATAATGATCGATGCTGGCGTCCCGAATGGTGCTGATGTAGTTATA
GTCGTCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATTATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCACATCTTGCGAATATATGT
GTAGAAACTGCCGGAAATCGTCGTGTATTCACTTCAGAGCGATGAAAACG
TTTCAGTTTTGCTCATGAAAAACGGTGTAACAGGGTGACACTATCCCATA
TCCCAGCTCACCGTCTTCATTGGCATACGAATTCGATGAACATTCGTCAG
CGGACAGATGTATAAGGCCGGAATAAACTGGCCTGTCCTACGTCTTAAAA
GCCGATATCAACTGAAC
UFO11819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14164-RB | 1331 | CG14164-RB | 846..1196 | 9..359 | 1755 | 100 | Plus |
| CG6709-RB | 1331 | CG6709-RB | 846..1196 | 9..359 | 1755 | 100 | Plus |
| CG6709-RA | 596 | CG6709-RA | 111..461 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9893323..9893464 | 359..218 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 9893517..9893658 | 218..77 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 9893707..9893780 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 54..94 | 410..450 | 115 | 75.6 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7092..7132 | 410..450 | 115 | 75.6 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2912..2950 | 401..439 | 114 | 76.9 | Plus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1650..1688 | 407..445 | 114 | 76.9 | Plus |
UFO11819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:55 Download gff for
UFO11819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6709-RB | 842..1202 | 1..367 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:41 Download gff for
UFO11819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14164-RB | 842..1202 | 1..367 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:51 Download gff for
UFO11819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6709-RA | 107..467 | 1..367 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:51 Download gff for
UFO11819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9893323..9893464 | 218..359 | 100 | <- | Minus |
| 3L | 9893518..9893654 | 81..217 | 100 | <- | Minus |
| 3L | 9893709..9893784 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:41 Download gff for
UFO11819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9886423..9886564 | 218..359 | 100 | <- | Minus |
| arm_3L | 9886618..9886754 | 81..217 | 100 | <- | Minus |
| arm_3L | 9886809..9886884 | 1..80 | 95 | | Minus |
