UFO11822.5prime Sequence
954 bp (950 high quality bases) assembled on 2012-06-29
> UFO11822.5prime
CAGTCGACATGGGCGGTCAGGGCAAGGCGATCAATAGGAAGCGTAAGTTT
GTCGGTCGCAAGGCGGACGATCCGGAGTTCGATCTGGACAAGAAGCAATT
CAAGGTGCTCCATCTGAATGCCACCGAAAAGCGGCTGATCATCGTTTTGG
AAGGAGCCCAACTGGAGACGGTGAAGGTGCACAACACTTTCGAGCTGCTG
AACTGCGACGATCACGCGGGAATTATGCGCAAAAACCAAAGAGATCCCGG
CTCCTGTCGTCCGGACATCACCCACCAGTGCCTGTTGATGCTCTTCGATT
CGCCACTGAACCGGGCCGGTCTGCTTCAGGTCTTTGTGCGCACCGAGCAT
AATGTGCTTATCGAAATCAATCCCCAGACGCGCATCCCGAGGACATTTAA
ACGCTTTGCTGGCCTAATGGTGCAATTGCTGCACAAGTTCCAAATTCGCG
CCAATGACTCCTCACGTCGTCTGATGAGTGTCATTAAGAATCCGATTACG
GATCATGTGCCGGTCGGTTGCAAGAAGTACGCCATGAGCTTCTCTGGCAA
ACTATTGCCCAATTGCCGGGATCTGGTGCCACATGGTGACGAGACGTCGG
CCAGCTATGATGAGCCGGTGGTCATCGTTATTGGAGCCTTCGCACATGGC
GTTCTCAAACGGACTACACGGAGGAGCTGTTCTCCATTACCAACTATCCA
CTTTCGGCGGCCATCGCGTGCTCCAAAATCTGTTCCGCCTTCGAGGAGGT
TTGGGGCGTGGTAGCAAGCTTTCTAGACCATTTCGTTTGGCGCGCGGGCC
AGGTAAGTGGTCATAATCATAATCATAATCAAAATCATAATCACACTAGC
CTAGGAGATCCTGGTTCATGACTTAGTGCTTGGAATTCTCACAGAAAAAC
GCCCGGGCGGCAACCGAGCGGTTCTTGAACAATCAGATGGAGTTCTGAGG
CCTT
UFO11822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3527-RA | 970 | CG3527-RA | 100..859 | 5..763 | 3745 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4552306..4552895 | 175..763 | 2885 | 99.7 | Plus |
| X | 23542271 | X | 4552072..4552246 | 5..179 | 860 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:27:40 has no hits.
UFO11822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:50 Download gff for
UFO11822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3527-RA | 104..868 | 1..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:23 Download gff for
UFO11822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3527-RA | 104..868 | 1..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:36 Download gff for
UFO11822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3527-RA | 98..862 | 1..767 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:36 Download gff for
UFO11822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4552070..4552243 | 1..176 | 97 | -> | Plus |
| X | 4552308..4552898 | 177..767 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:23 Download gff for
UFO11822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4446103..4446276 | 1..176 | 97 | -> | Plus |
| arm_X | 4446341..4446931 | 177..767 | 99 | == | Plus |
