UFO11825.5prime Sequence
730 bp (686 high quality bases) assembled on 2012-06-29
> UFO11825.5prime
CAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGGCGTACTCG
TTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTTTCAGCCTT
GGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGCAGCCATGG
CCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCGTTGTGATG
GCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTGATTGCCGG
ATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCACCTGGCAG
CCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTGCCATTGGG
ATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCACGCCTTTT
TGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGGTCTGTATG
GGCTGATCGTCGCCATTTACCTGTACACCAAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGATAACATAGAGTAGA
AATCCCCTGTTGGAGCCGTCACAATGAGCGATAATCCAAGGATGGGCTAG
GATACGTGTCAAGACTAATATCTGATCACT
UFO11825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-3-RB | 633 | CG32090-RB | 69..542 | 9..482 | 2370 | 100 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 23..496 | 9..482 | 2370 | 100 | Plus |
| Vha16-1-RB | 2798 | CG3161-RB | 145..563 | 66..478 | 555 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11473408..11473881 | 9..482 | 2370 | 100 | Plus |
| 3L | 28110227 | 3L | 11475145..11475468 | 159..482 | 375 | 74.4 | Plus |
| 2R | 25286936 | 2R | 6627477..6627668 | 478..287 | 345 | 78.6 | Minus |
| 2R | 25286936 | 2R | 6627768..6627925 | 250..93 | 295 | 79.1 | Minus |
| 2L | 23513712 | 2L | 10736392..10736579 | 478..291 | 280 | 76.6 | Minus |
| 2R | 25286936 | 2R | 16947727..16947868 | 469..328 | 215 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:28:23 has no hits.
UFO11825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:58 Download gff for
UFO11825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-3-RA | 15..502 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:49 Download gff for
UFO11825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-3-RA | 15..502 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:56 Download gff for
UFO11825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-3-RA | 15..502 | 1..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:56 Download gff for
UFO11825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11473400..11473887 | 1..489 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:49 Download gff for
UFO11825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11466500..11466987 | 1..489 | 98 | | Plus |
