UFO11826.5prime Sequence
1020 bp (896 high quality bases) assembled on 2012-06-29
> UFO11826.5prime
CAGTCGACATGTTGTTACAATCGATATTAATGAAAATATTGGCCGTTTTT
TTGGTCTGCTGGCTGGGACACGTCACAGCCCAGTCATCTGCCGATTATAT
AGAGCTTGAAATTGGTTCAAGGGGTGAAGGTCCACCGGAAAAGACGGAAT
TTCCCTGGGGCAATGATGACCAGGATCTTGAAGCAACATTTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAAT
CGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGG
AAAACGGTGTACAGGTGAACACTATCCCATATCACCAGCTCACGTCTTTC
ATGCATACGAAATTCCGGATGAGCATCATCAGGCGGGCCAGATTGTGAAT
AAACGGCCGATAAACTTGTTGCTTAATTTTTCTTTACGTCTTTAAAAGGC
CTTAATAATCCAGCTGACGTCTGGTATAGTACTGAGCACTGACTGAATGC
TCAATGTTCCTAGATGCATT
UFO11826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43071-RC | 514 | CG43071-RC | 26..208 | 9..191 | 915 | 100 | Plus |
| CG43071-RB | 316 | CG43071-RB | 26..208 | 9..191 | 915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18864927..18865056 | 191..62 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 18865140..18865193 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:28:27 has no hits.
UFO11826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:59 Download gff for
UFO11826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43071-RA | 1..165 | 30..195 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:51 Download gff for
UFO11826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43071-RB | 18..217 | 1..202 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:59 Download gff for
UFO11826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43071-RB | 18..217 | 1..202 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:59 Download gff for
UFO11826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18864927..18865055 | 63..191 | 100 | <- | Minus |
| 2R | 18865140..18865199 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:51 Download gff for
UFO11826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14752432..14752560 | 63..191 | 100 | <- | Minus |
| arm_2R | 14752645..14752704 | 1..62 | 93 | | Minus |
