UFO11827.5prime Sequence
1086 bp (978 high quality bases) assembled on 2012-06-29
> UFO11827.5prime
CAGTCGACATGATTGGATTCCTGCTGATTGGAGTGGGCGTGTACGCGCGT
GCCGCCTCCATAGTGACCAACCTGCCGATTGTGGGCGGGATCCTGGCCTG
CGGTGTCATCCTCATATGCATATCCATGCTGGGACTCGCCGGAGCCGTCA
AGCACCACCAAGTGATGCTCTTCTTCTACATGATCATTCTGTTCATGCTG
TTCCTGATCCAGTTCTCCATCGCCAGTTCCTGCTTGGCCGTCAACTCCGA
ACAGCAGCAGCAGTTCGCCGAGCAAGGATGGATGACGGTGCCCACGGATT
TGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATTCAATGCCACC
GCACCGAGCACAACTTCCGTGGTTCCCCCGTCCAATGAGCCCTCGTGCGA
GCTGATCAATCAACAGTGCTGTGCCCACTCGTCCGAGCCGGACTGCCGTT
GCGAACCATGTGGACCCCTACTGGAGGACAAGATCGACTATGCCTTCAAG
TTGTGCGGCGGTCTGGGCATCTTCTTCAGCTTCACTGAGTTCGTCGGCGT
CTGGCTAACAGTTCGCTATCGCAATCAAAAGGATCCGCGGGGCTTGCCCA
GCGCTTTTCTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGAAGCCATCACAAACGCATGATGATCTGATCGCAGCGCATCAGC
ACTTGTCGCTTGCGTTTATATTTGCCATGTGAAACGGGGCGAGAGTGTCA
TATTGCCACGTTATCAACTGTGAAACTCACCAGAATGCTGAAACGAAACT
ATTTTCTCATAATCTTAAGAAAGCAGGTACGTAACG
UFO11827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp97E-RG | 2298 | CG6323-RG | 176..778 | 9..611 | 3015 | 100 | Plus |
| Tsp97E-RD | 2635 | CG6323-RD | 176..778 | 9..611 | 3015 | 100 | Plus |
| Tsp97E-RE | 1757 | CG6323-RE | 176..706 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26963158..26963520 | 539..177 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 26964118..26964285 | 176..9 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 26963009..26963082 | 611..538 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:28:31 has no hits.
UFO11827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:33:59 Download gff for
UFO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RD | 181..792 | 3..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:53 Download gff for
UFO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RF | 23..638 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:01 Download gff for
UFO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RD | 173..784 | 3..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:01 Download gff for
UFO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26963003..26963080 | 540..619 | 95 | <- | Minus |
| 3R | 26963158..26963520 | 177..539 | 100 | <- | Minus |
| 3R | 26964118..26964285 | 9..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:53 Download gff for
UFO11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22788725..22788802 | 540..619 | 95 | <- | Minus |
| arm_3R | 22788880..22789242 | 177..539 | 100 | <- | Minus |
| arm_3R | 22789840..22790007 | 9..176 | 100 | | Minus |
