Clone UFO11828 Report

Search the DGRC for UFO11828

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:118
Well:28
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG34180-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11828.5prime Sequence

1007 bp (893 high quality bases) assembled on 2012-06-29

> UFO11828.5prime
CAGTCGACATGCTTTACAAATCTCTGCTGTTTTGCTTGGCGGCGGTTTTG
TTCATTCCGGCGCATTCCGATGCCAAGGAATATCAGTTCATCCCCGCTCG
ATGCGAGGAGCAGCCTGGAGTGGGTCAACAGATTGGCGGTCCCTTAAGCA
TATGCAGCTTTCCACCAGACTATGCGAAACCGGATTCAGAGGACATACAG
GCCGTGATTAAACACATTAAGAGCTTGAAATTGAATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAATCGTCGT
GGTATTCACTCAGAGCGATGAACGTTTCAGTTTGCTCATGGAAACGGTGG
TAACAGGGTGACACTATCCATATCACAGCTCACGTCTTTCATGCATACGA
ATCGGATGAGCATCATCAGGCGGCAGATGTGATAGCGATAACTGTGCCTA
TTCCTACGTCTAAGCGTATTTCAGCTGACGTTGTTAAGTACTTGACACTG
ACTGAAT

UFO11828.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG34180-RB 376 CG34180-RB 35..262 9..236 1140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6060668..6060824 80..236 785 100 Plus
2L 23513712 2L 6060544..6060618 9..83 360 98.7 Plus
Blast to na_te.dros performed 2014-11-28 03:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10324..10370 53..7 118 72.3 Minus

UFO11828.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:00 Download gff for UFO11828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34180-RB 28..262 1..236 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:56 Download gff for UFO11828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34180-RB 28..262 1..236 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:03 Download gff for UFO11828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34180-RB 28..262 1..236 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:03 Download gff for UFO11828.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6060537..6060614 1..79 95 -> Plus
2L 6060668..6060824 80..236 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:56 Download gff for UFO11828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060537..6060614 1..79 95 -> Plus
arm_2L 6060668..6060824 80..236 100 == Plus