UFO11829.5prime Sequence
1076 bp (959 high quality bases) assembled on 2012-06-29
> UFO11829.5prime
CAGTCGACATGAGTCACATAACTCGAAAGCGTTTACTAACTTTGGATGAG
GAATCTCAGCATATCAATTCGACAAAACGATGTGGGAGCAACTGCATCGA
GAAGATGTTAACAAAATGGTCCCGCCAAAGTATTCCAGGCGTCAATAGCA
TTTCGCGGAAGCGATCGTTTCCTTGGGAGGATAACTCGCCTGATATATTT
CCCGCAAAACATTCACGAAAGCATATCATAAAAAAGAAGTCGAAAACAAT
TCACGAGCCAGAGGTCCCGATAGATTTTTTGATGGGACTGCCAGTATTGC
TTGATAGTGACTTTAGTGATTCGGAGGAATGTCGCCCAAAATCAGAGATT
CATGTGGCCAAACCAGAAACTGAAGATAACCGAGATTTGTTTACCTATCA
GCAATTGAAATTAATGTGCTGCGAAATGATGAAACAATGCGAAGATCGGG
TAGTACTGGAATATGAAATAGCATTGACTCAAAAAATGGCAGAGCAGTAT
GATACATTCATCAAGTTCAACCACGACCAATTGCAGCGAGAATGTGAACA
TAGGGCTAGTTATTTGTCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGAAAGCCATCACAAACGGCATGATGAACCTGATCG
CAGCGCATCAGCACCTGTCGCTTGCGTATATATTTGCCCATGTGAAACGG
GGCGAGAGTGTCATATGCACGTTTATTCAACTGTGAAACTCACCAAGATG
GCTGAACGAAAACATATTCTCATATCGTTAGAATAGGCAGGTTCACGTAA
CGCAATCTGCAATTTGTCAACTGCGA
UFO11829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42830-RA | 720 | CG42830-RA | 67..629 | 7..569 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17812044..17812606 | 569..7 | 2815 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 2204..2232 | 1010..1038 | 109 | 86.2 | Plus |
UFO11829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:01 Download gff for
UFO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42830-RA | 1..564 | 9..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:58 Download gff for
UFO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42830-RA | 62..629 | 1..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:04 Download gff for
UFO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42830-RA | 62..629 | 1..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:04 Download gff for
UFO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17812044..17812610 | 1..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:58 Download gff for
UFO11829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17812044..17812610 | 1..569 | 99 | | Minus |
