UFO11831.5prime Sequence
1091 bp (1005 high quality bases) assembled on 2012-06-29
> UFO11831.5prime
CAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTGCTCGCAAG
CGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTTGGCAATGA
TTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCTCCCCAAGA
AATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGCGGAAAAAT
CCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCAGAACATAA
GGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCTATCACCGG
TATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGCAATCGGAT
GTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCCAGACGCAC
ACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGTTTCACCGA
CTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCCAAAAAAAG
AGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATGGAGGTCTC
ATTGCCAAGCATTGTAGGTCAGAACAATGAGCACATTAGCAGACGGTGGA
CGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATCTG
GTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCTGA
AGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATATTT
TTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGACGAG
ATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTCAG
GAGTTAGCATCACGCAATGGGATAGATGAGATGATATACGGTGGATATGT
ACTATACTTCGTTGGACCTGAGGATACGCCGCACAGCATTGGTCTCAATC
ATTTCATACGCTCACTGGCCATCAACAAAGAGTCACAATATAACACGTGC
TGCTAAATGACTACATTCAGAAGCTCTTTGCGAACCTAGAGTTCAGTAAG
TACGGCGATAATGAAGCATCTTTGCTAACCATGAACTGATA
UFO11831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RD | 1500 | CG4449-RD | 77..1111 | 9..1031 | 4855 | 98.6 | Plus |
| CG4449-RA | 1677 | CG4449-RA | 254..1288 | 9..1031 | 4855 | 98.6 | Plus |
| CG4449-RE | 1497 | CG4449-RE | 77..1108 | 9..1031 | 4800 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23250600..23251104 | 569..65 | 2525 | 100 | Minus |
| 3R | 32079331 | 3R | 23250023..23250202 | 964..790 | 635 | 96.7 | Minus |
| 3R | 32079331 | 3R | 23250425..23250540 | 685..570 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 23250256..23250363 | 791..684 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23251167..23251224 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 736..783 | 111 | 72.9 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 736..783 | 111 | 72.9 | Plus |
UFO11831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:02 Download gff for
UFO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1294 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:02 Download gff for
UFO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RA | 250..1300 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:08 Download gff for
UFO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RA | 250..1300 | 1..1041 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:08 Download gff for
UFO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23250023..23250201 | 791..964 | 96 | <- | Minus |
| 3R | 23250257..23250363 | 684..790 | 100 | <- | Minus |
| 3R | 23250427..23250540 | 570..683 | 100 | <- | Minus |
| 3R | 23250600..23251102 | 67..569 | 100 | <- | Minus |
| 3R | 23251167..23251228 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:02 Download gff for
UFO11831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19076149..19076262 | 570..683 | 100 | <- | Minus |
| arm_3R | 19075745..19075923 | 791..964 | 96 | <- | Minus |
| arm_3R | 19075979..19076085 | 684..790 | 100 | <- | Minus |
| arm_3R | 19076322..19076824 | 67..569 | 100 | <- | Minus |
| arm_3R | 19076889..19076950 | 1..66 | 93 | | Minus |
