UFO11833.5prime Sequence
917 bp (378 high quality bases) assembled on 2012-06-29
> UFO11833.5prime
CAGTCGACATGCACCTGACGCTGATCAATTTGTTCAAGAAGACTGTGCCC
GGCCACATATTCCGGGGCAAGCGGCGCCTGGTGAAACCGGTCAGTCAGCG
AGCAATGGACACCCTGACCCACGAGTACGAGCGCCAGGAGCAGGTAATGT
TACTCCTCCGACACCCGTATCTCACCATGGAGCAGTCATTCGGTCATGCC
AAGGAGCTGCAGAAGCGCGAGAAGCTCGTTGCCAGATGGACGGACGACCA
GACACTGCGCAAGATGAAGCCACACGTTACCATCGAGGAGCGGCTGAACC
AGCTGAAGATCAAGGAGGCCTGGGACGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGATATCTTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCCTTAAGCATTCTGCCGACTTGGAAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGGTGAAAAACGGGGGCAAAAAAGTTGTCCATAATGGCCACGTTT
AAAATCAAAACCTGGTGAAACTACCCCAGGGATTGGCTGAAACGAAAAAA
CACATTCTCATTAACCCCTTTTAGGGAAATAAGCCTGGGTTTTCACCGTA
CACGCCACATTCTTGCGAATATAAGGTGTAGAAACTGACCGGAAATCCGT
CTAGGTAATTCACTCCC
UFO11833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14817-RB | 920 | CG14817-RB | 132..449 | 9..326 | 1575 | 99.7 | Plus |
| CG14817-RA | 508 | CG14817-RA | 132..449 | 9..326 | 1575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1876968..1877139 | 180..9 | 860 | 100 | Minus |
| X | 23542271 | X | 1876765..1876912 | 326..179 | 725 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:28:52 has no hits.
UFO11833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:04 Download gff for
UFO11833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14817-RA | 53..381 | 1..332 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:07 Download gff for
UFO11833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14817-RA | 125..453 | 1..332 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:11 Download gff for
UFO11833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14817-RA | 125..453 | 1..332 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:11 Download gff for
UFO11833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1876765..1876911 | 180..326 | 99 | <- | Minus |
| X | 1876969..1877146 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:07 Download gff for
UFO11833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1771002..1771179 | 1..179 | 97 | | Minus |
| arm_X | 1770798..1770944 | 180..326 | 99 | <- | Minus |
