UFO11837.5prime Sequence
1096 bp (983 high quality bases) assembled on 2012-06-29
> UFO11837.5prime
CAGTCGACATGAGCCACATACCCATTAGTAACACAATTCCAACAAAACAA
ACTGATGGTAATGGTAAAGCTAACATTTCGCCGGATAAGCTGGATCCCAA
GGTTTCGATCGACATGGAGGCGCCGGAGTTCAAGGATTTTGCCAAGACAA
TGGTCGACTTTATAGCCGAATATCTGGAGAATATACGCGAAAGGCGCGTT
CTGCCGGAAGTGAAGCCTGGCTACCTGAAGCCATTGATTCCGGATGCTGC
GCCCGAGAAGCCGGAGAAGTGGCAGGATGTGATGCAGGACATCGAGCGAG
TCATCATGCCGGGCGTGACACACTGGCACAGTCCCAAGTTTCATGCCTAC
TTCCCCACGGCCAACTCGTATCCAGCGATCGTTGCGGACATGCTGAGTGG
AGCGATTGCCTGCATCGGATTCACGTGGATCGCCAGTCCCGCGTGCACGG
AACTCGAGGTGGTCATGATGGATTGGCTGGGCAAGATGCTGGAGCTGCCG
GCAGAGTTCCTGGCCTGTTCGGGCGGCAAGGGTGGCGGTGTCATCCAGGG
CACGGCCAGTGAGTCCACACTGGTGGCTCTGCTGGGAGCCAAGGCCAAGA
AGTTGAAGGAGGTGAAGGAGCTCCATCCGGAGTGGGATGAGCACACCATC
TTGGGCAAGTTGGTGGGCTACTGCTCGGACCAGGCTCACTCATCCGTGGA
GCGGGCTGGTCTTCTGGGCGGAGTAAAGCTCCGTTCCGTGCAGTCCGAGA
ATCACAGAATGCGTGGTGCTGCCCTGGGAAAAGGCCATCGAACGGGATGT
GGCCGAGGGTTTGATTCCCTTCTACGCGGTGGTCACCCTGGCACCACCAA
CTCCTGCGCCTTCGACTACTTGGATGAGTGTGACCGGTGGGAAACAGCAC
AATTTGTGGATCCATGTGACGCTGCCTATGCCGGATCCGCTTTCATTTGC
CCGAGTATCGCCACTTGATGAGGGCATCGAATCAGCAGACTCTTTCAATT
TCATCCACACAATGATGCTGTGACTTGACTGCTCGCATGGGGCCTGAGAT
CCAGTGGGTGTCACGCGTTCAGTGAAACTCCTTACTGGCCGAACTG
UFO11837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RC | 2085 | CG10697-RC | 255..1292 | 9..1035 | 4840 | 98.6 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 196..1136 | 106..1035 | 4355 | 98.4 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1065..2004 | 107..1035 | 4350 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19117314..19118130 | 1003..192 | 3710 | 98.9 | Minus |
| 2L | 23513712 | 2L | 19119319..19119417 | 107..9 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 19119155..19119242 | 194..107 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:29:07 has no hits.
UFO11837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:06 Download gff for
UFO11837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 242..1276 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:15 Download gff for
UFO11837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 248..1282 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:19 Download gff for
UFO11837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 248..1282 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:19 Download gff for
UFO11837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19117286..19118128 | 194..1026 | 98 | <- | Minus |
| 2L | 19119156..19119241 | 108..193 | 100 | <- | Minus |
| 2L | 19119319..19119422 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:15 Download gff for
UFO11837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19117286..19118128 | 194..1026 | 98 | <- | Minus |
| arm_2L | 19119156..19119241 | 108..193 | 100 | <- | Minus |
| arm_2L | 19119319..19119422 | 1..107 | 96 | | Minus |
