UFO11838.5prime Sequence
1105 bp (985 high quality bases) assembled on 2012-06-29
> UFO11838.5prime
CAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGTGCCTCTGC
CTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGATGTGGAGGA
GGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGAGACCGACG
GCGACTGCCGCGAGGTGTACAGGTGCGACAGTGCCGGCGAAGATGGCACT
TGGCGTTTGGCGCCGATTCGCTGCGCCGGCGGCCTGGCATTCGATGTTTT
GCGCCAACTTTGCGATTGGAAGTCGAATGTGAAGTCCTGCGATGTGCTCG
AGAAGCCGCGCAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGT
CCCGAGGGTAAGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCT
CTTCTGCAACGGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCT
GCTCTGTCGATGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAG
TGCGCCCTGCCCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGG
CGGCATTGAGCCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACG
GCGCCGTCAACGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGA
CAGCGCCAGAATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTC
CCACAAGTACACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGAC
ACGAGATCTCCGTGTTCTCGCTAACGCACAAAGGATGACCCCAACTACTG
GTGCGGCGGCAGCTACGACGACTGGCTGGCCGAGATGGCCGGCTCCCGAC
TGATCGTGAGCGCTTCGCCAACATCACGACGGCTCCATCATCGGCATGCG
GCGCCCTACTCCGCGTGGCGCAACAAGCAGTTCGAGATGATGGACGATCA
GTTCTCGTGTACGACGCCTCCATCACCGCCTCCCTTGCGCGTGCCCATTT
GGCATAACACCCTGTACTCTCGCATGCCCGCACAAGTGCAACGCCAACCC
CTAACTGTCTTTCGAGGATCACCCCGTGTGGGAATGTCATGAACGAACTG
AACCG
UFO11838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RH | 2183 | CG8756-RH | 114..1223 | 8..1105 | 4915 | 97.1 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..1295 | 61..1105 | 4650 | 97 | Plus |
| verm-RG | 2165 | CG8756-RG | 388..1205 | 300..1105 | 3455 | 96.1 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 8..60 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19691055..19691656 | 1048..454 | 2390 | 96.5 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 453..304 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692721..19692853 | 303..171 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 19692981..19693095 | 174..60 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19702222..19702487 | 733..465 | 500 | 79.9 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:29:11 has no hits.
UFO11838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:07 Download gff for
UFO11838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RC | 102..1219 | 1..1105 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:16 Download gff for
UFO11838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RF | 105..410 | 1..305 | 98 | -> | Plus |
| verm-RF | 524..1335 | 306..1105 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:20 Download gff for
UFO11838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RH | 106..1223 | 1..1105 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:20 Download gff for
UFO11838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19690993..19691656 | 454..1105 | 95 | <- | Minus |
| 3L | 19691809..19691958 | 304..453 | 100 | <- | Minus |
| 3L | 19692721..19692851 | 173..303 | 100 | <- | Minus |
| 3L | 19692983..19693094 | 61..172 | 100 | <- | Minus |
| 3L | 19694973..19695031 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:16 Download gff for
UFO11838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19684093..19684756 | 454..1105 | 95 | <- | Minus |
| arm_3L | 19684909..19685058 | 304..453 | 100 | <- | Minus |
| arm_3L | 19685821..19685951 | 173..303 | 100 | <- | Minus |
| arm_3L | 19686083..19686194 | 61..172 | 100 | <- | Minus |
| arm_3L | 19688073..19688131 | 1..60 | 93 | | Minus |
