UFO11839.5prime Sequence
1083 bp (958 high quality bases) assembled on 2012-06-29
> UFO11839.5prime
CAGTCGACATGAGCACGGTGTTCATAAACTCGCGCAAGAGCCCCAACGTG
CTGAAAAAACAGGGCACCGACCAGTGGGTCAAGCTGAACGTAGGCGGTAC
CTACTTCCTCACCACAAAGACGACGCTCTCCCGTGACCCAAATTCGTTCC
TCTCCCGTCTGATTCAGGAGGACTGCGACTTGATATCAGATCGGGACGAG
ACAGGAGCCTACCTGATCGACAGAGACCCCAAATACTTTGCACCCGTGCT
CAATTACCTGCGCCACGGCAAGCTTGTGCTCGATGGCGTCTCAGAGGAAG
GCGTCCTGGAGGAGGCTGAGTTCTACAACGTGACGCAGCTGATAGCGCTG
CTGAAGGAGTGCATCCTGCACAGGGATCAGCGACCCCAAACGGACAAGAA
GCGCGTTTATCGTGTGCTGCAGTGCCGCGAGCAGGAACTAACCCAGATGA
TCTCAACGCTGTCGGATGGCTGGAGGTTCGAGCAGCTGATCAGCATGCAG
TACACGAACTACGGGCCCTTCGAAAACAATGAGTTCCTGTGCGTGGTATC
CAAAGAGTGTGGCACAACGGCCGGCCGGGAGCTGGAGCTCAACGACCGGG
CCAAGGTCCTGCAGCAGAAGGGATCGCGAATTCTTGGAATTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAATTACGCCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGCAGCATCACAAAC
GCATGATGACTGATCGCAGCGCATCAGCACTTGTCGCTTGCGTATAAATA
TTTGCCATGTGAACGGGGCGAGAGTTGTCATATGCACGGTTATCAACTGT
GAACTCACCAGAATGGCCTGAACGAAAACATAT
UFO11839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inc-RC | 2776 | CG32810-RC | 393..1026 | 8..641 | 3170 | 100 | Plus |
| inc-RD | 4686 | CG32810-RD | 1825..2458 | 8..641 | 3170 | 100 | Plus |
| inc-RB | 3254 | CG32810-RB | 393..1026 | 8..641 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1513462..1513649 | 8..195 | 940 | 100 | Plus |
| X | 23542271 | X | 1514854..1515041 | 444..631 | 940 | 100 | Plus |
| X | 23542271 | X | 1514482..1514668 | 194..380 | 935 | 100 | Plus |
| X | 23542271 | X | 1514724..1514796 | 378..450 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:29:14 has no hits.
UFO11839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:08 Download gff for
UFO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32810-RB | 398..1040 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:19 Download gff for
UFO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inc-RB | 387..1029 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:22 Download gff for
UFO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inc-RB | 387..1029 | 1..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:22 Download gff for
UFO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1513456..1513648 | 1..194 | 97 | -> | Plus |
| X | 1514483..1514668 | 195..380 | 100 | -> | Plus |
| X | 1514727..1514792 | 381..446 | 100 | -> | Plus |
| X | 1514857..1515041 | 447..631 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:19 Download gff for
UFO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1407489..1407681 | 1..194 | 97 | -> | Plus |
| arm_X | 1408516..1408701 | 195..380 | 100 | -> | Plus |
| arm_X | 1408760..1408825 | 381..446 | 100 | -> | Plus |
| arm_X | 1408890..1409074 | 447..631 | 100 | == | Plus |
