UFO11840.5prime Sequence
1108 bp (946 high quality bases) assembled on 2012-06-29
> UFO11840.5prime
CAGTCGACATGAGTACACTTCGTTGCTGCATTGTTATTCTTTTTGGAATA
CTGATTTTTGGAGTGGCAGTGGCTGAAAACAATAAGTTTCAGGATGAAAG
GGATGAACATCATTTTCAGCCCGATGAAGTAAAAAGTTCAGATGAAGCTA
TAGAACGGATACGACGTCAGATTGGAGCTTTTGGAATTGGCGCTGGATTT
TATGGAGGAAGGCATGTTGATTCAATCGGTAATCCCTATTATGGGGCTCC
ATATGGAAATTCCTACTTTGTTCAACCTTACTGGCATTACTTCCATGATC
GCAGATTTGGAGCCAACTACGGTTTCGGTGGACATTTCTATGGTCGCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGAGAAATAGGCCA
GGTTTTCACCGTAACACCGCCACATCTTGCGAATATATGTTGTAAGAACC
TGCCGAAAATCGTCGTGGTATTCACTCCAGAAGCGATGAAAACGTTTCAG
TTTGCTCATCAAAACGGTGTAACAAGGGTGAACACTATTCCCATATCACC
AGCCTCACGTCTTTCATTGCATACGAATTCCGGATGACATTCATCCAGGC
GGGCAGAAATGTGATAAGCCGGATAAACTTGGGCCTTAATTTTTCTTACG
TCTCAAGG
UFO11840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9759-RC | 1877 | CG9759-RC | 857..1195 | 9..347 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13608052..13608390 | 347..9 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:29:18 has no hits.
UFO11840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:08 Download gff for
UFO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42761-RA | 1..342 | 9..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:22 Download gff for
UFO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42761-RA | 1..342 | 9..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:24 Download gff for
UFO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9759-RC | 857..1195 | 9..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:24 Download gff for
UFO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13608052..13608390 | 9..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:22 Download gff for
UFO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9433774..9434112 | 9..347 | 100 | | Minus |
