UFO11841.5prime Sequence
1093 bp (981 high quality bases) assembled on 2012-06-29
> UFO11841.5prime
CAGTCGACATGGCCAAAATCGTACTCTTCTGCCTGCTGAGCCTCTTGGCA
TGCGCTGCAGGTCAACGCATTACGACAATCCACCTGGATGGAGTGCAGTA
CTTCATCAGCCGAATGAATCCCTACTCCCCGGAGCTCAACTACTTCCTGG
CCTACCAGTACTGTCGCTCCCTGGGCCTGCAACTGGCCTCCTTTGAGACG
AAGGAGAAGGCCGAGTCGATGACCACGTATCTGAAGAATGCCGGTTACGG
CAACTACGATTTCTGGACCTCCGGCAATCGCCTGGGCACGGGCATGTTCC
TATGGATGAGCACTGGTCTGCCGTTTAACGCCACTTTTGATTTCTTCGAA
AACTCGGCGGACGCCATCCAGGCCGGTCTGCTCGATCCCGTCGATCATAA
TAGCAACACCTCACCCCAGCGCACCGCTCGCGACAGCAGCAGTGGCGCCG
AGAAGGGATGCGTGATCCTGAAGCAGCCCACGCTCAAGTGGATGCCCGAG
GACTGCTCGGCCGTGAAGGACTTCATTTGTGAGCAGACCCGCTGCTACTA
CTACAACTACGGCAGCATCCCCGTCTCGTCGGCGCAGGGGGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGCATGATGAACCTGATCGCAGCGCATCAGCACCTTGTCGCTTGCGTA
TATATTGCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGTTAATCAA
CTGTGAACTCACCAGATGCTGAACGAAAACTATTCTCATACCCTTTAGAA
TAGGCAGTCACGTAACCGCCCATCTGCCATATGGTAACTGCGA
UFO11841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43164-RD | 1962 | CG43164-RD | 233..814 | 9..590 | 2910 | 100 | Plus |
| CG43164-RA | 2450 | CG43164-RA | 233..814 | 9..590 | 2910 | 100 | Plus |
| CG43164-RC | 2338 | CG43164-RC | 556..1136 | 9..589 | 2905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17505634..17506011 | 59..436 | 1890 | 100 | Plus |
| 2R | 25286936 | 2R | 17506154..17506311 | 433..590 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 17502909..17502962 | 9..62 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:29:21 has no hits.
UFO11841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:09 Download gff for
UFO11841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18431-RA | 175..767 | 2..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:24 Download gff for
UFO11841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43164-RA | 226..818 | 2..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:26 Download gff for
UFO11841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43164-RA | 226..818 | 2..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:26 Download gff for
UFO11841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17502902..17502960 | 2..60 | 93 | -> | Plus |
| 2R | 17505636..17506011 | 61..436 | 100 | -> | Plus |
| 2R | 17506158..17506315 | 437..595 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:24 Download gff for
UFO11841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13393663..13393820 | 437..595 | 98 | == | Plus |
| arm_2R | 13390407..13390465 | 2..60 | 93 | -> | Plus |
| arm_2R | 13393141..13393516 | 61..436 | 100 | -> | Plus |
