UFO11842.5prime Sequence
1089 bp (968 high quality bases) assembled on 2012-06-29
> UFO11842.5prime
CAGTCGACATGTGGCTCTGGGACTATATTATGCTAATCAGACAGCGACAG
GAGACGCGGCGCAATGTCAGAGTTCCCTTGGTTTACCTCGGCATAGGTGC
TGTTGGTCTGTGCGCCATCTACCTGATCTTTGGCTGGGGCGCCCAACTAC
TGTGCAACATCATTGGGGTTCTGTACCCTGCATATATTTCCATCCATGCC
ATCGAGTCCAGCACAAAGCAGGACGACACCAAGTGGCTGATCTACTGGGT
CACGTTTGGAATCTTCACCGTGATTGAATTCTTTTCGAGTCTGCTAACTT
CGGTGATTCCCTTTTACTGGCTGCTGAAGTGTGCTTTCCTCATCTGGTGC
ATGCTGCCCACGGAACAGAATGGTTCTACCATCATCTACAACAAGCTGGT
GCGACCCTACTTCCTGAAACATCACGAATCCGTTGACAGGATCATCGATG
ATGGCATGAAGAAAGCCGCTGGAGTGCTGAAGCATGACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCC
ACGTTTAATCAAACTGGTGAACTCACCCAGGGATTGGCCTGAGACGAAAA
CATATTCTCATAACCCTTTAGGAAATAGCCAAGTTTTCACCGTACACGCC
ACATCTTGGCGAATATATTGTGTAGAACTGCGAATCGTCTGCATCCCTCC
GAGCGCATGAAACGTTCAGTTGCTCATGGAACCGGTTAC
UFO11842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8331-RB | 877 | CG8331-RB | 205..684 | 9..488 | 2400 | 100 | Plus |
| CG8331-RD | 846 | CG8331-RD | 261..653 | 96..488 | 1965 | 100 | Plus |
| CG8331-RC | 1023 | CG8331-RC | 438..830 | 96..488 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14172287..14172522 | 94..329 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 25786726..25787057 | 442..111 | 1090 | 88.6 | Minus |
| 2R | 25286936 | 2R | 14172582..14172683 | 328..429 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 14171364..14171454 | 9..99 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 14172747..14172805 | 430..488 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:29:25 has no hits.
UFO11842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:10 Download gff for
UFO11842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 220..701 | 5..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:26 Download gff for
UFO11842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 203..684 | 5..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:28 Download gff for
UFO11842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 203..684 | 5..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:28 Download gff for
UFO11842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14172584..14172683 | 330..429 | 100 | -> | Plus |
| 2R | 14172747..14172805 | 430..488 | 100 | == | Plus |
| 2R | 14171362..14171451 | 5..96 | 97 | -> | Plus |
| 2R | 14172290..14172522 | 97..329 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:26 Download gff for
UFO11842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10058867..10058956 | 5..96 | 97 | -> | Plus |
| arm_2R | 10059795..10060027 | 97..329 | 100 | -> | Plus |
| arm_2R | 10060089..10060188 | 330..429 | 100 | -> | Plus |
| arm_2R | 10060252..10060310 | 430..488 | 100 | == | Plus |
