UFO11843.5prime Sequence
1108 bp (974 high quality bases) assembled on 2012-06-29
> UFO11843.5prime
CAGTCGACATGGTGGATCGCAGCGATAATGCGGAATCCTTCGACGACGCC
GTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAAAAGAACAC
GCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATGGCCCTCGT
TGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCAAGGACTAC
TCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAGCAGAACCA
TCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCGATG
GTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTGGATCGGTG
TGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAGGGCGAAGTGAA
CAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCACCAAGACGC
CGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCAGCAAGCCG
GAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGTCATCAAAA
GGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGGCTATTTGCTGT
CAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATGCCACACCC
AAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACCGGCCACACCGC
CGTTGTTGAGGACGTGGCTTGACATCTGCTACATGAGTCTCTGTTCGGAT
CGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGCGCAACAACAAC
ACCTCGAAGCCCTCGCATACAGTGTACGCTCACACAGCGGAAGTCAATTG
CTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCACGGGCTCCGCTG
ACAGACTGTAGCTCTATGGGATCTGCGCACCTCAAGCTAAACTACATTCC
TTCGAGTCGCACAAGGACGAGATCTCAAGTGCATGGTCCGCCGCATAACG
AGACTATTTCTCGCCTCCTCCGGCCCTGGACCGCCGCCTAACCGTCTGAA
TTTGTCAAGTCGCGAGGAACAAAGTACGAGATGCTGAGACGGAACACCCC
GACTGCTC
UFO11843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-RB | 1825 | CG4236-RB | 313..1418 | 4..1099 | 5000 | 97.6 | Plus |
| Caf1-RA | 1828 | CG4236-RA | 313..1421 | 4..1099 | 4960 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15225968..15226527 | 30..589 | 2800 | 100 | Plus |
| 3R | 32079331 | 3R | 15226636..15227099 | 588..1048 | 1880 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:29:29 has no hits.
UFO11843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:11 Download gff for
UFO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 320..1378 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:28 Download gff for
UFO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 311..1369 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:29 Download gff for
UFO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 311..1369 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:29 Download gff for
UFO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15225969..15226526 | 31..588 | 100 | -> | Plus |
| 3R | 15226637..15227108 | 589..1056 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:28 Download gff for
UFO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11051691..11052248 | 31..588 | 100 | -> | Plus |
| arm_3R | 11052359..11052830 | 589..1056 | 96 | | Plus |
