UFO11846.5prime Sequence
1131 bp (988 high quality bases) assembled on 2012-06-29
> UFO11846.5prime
CAGTCGACATGTACCTACGTCAACAACTCTGGGTTCTCTTGCTCTGGCTC
TGCTTCGTCGTTCTCAGCGTGCATGGCATGCCGTGGAAATGGGGACCTGC
CTCCAATTCTGGACCCCATGGCGGACCCGCCTGGAATGGCGGAGAAGAGT
CCACCGACAATATAGTCATCCATTCGAAAAACAGCGGCAAGTGGCGTTAC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAG
TTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACC
AGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAG
CCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTTC
TTTACGGTCTTTAAAAGGCCGTAATTATCCAGCCTGAACCGTCTGATTAT
AGGAACATTGAGCAACCTGATGAAAATGGCCTTCAAATGTTTCTTTTACA
ATGCCATTGGGAATATCCAACGGGTGAATTTCCAGTGAATTTTTTTCTCT
CCAATTTTACCTTCCTTAACCTCCTGAAGAT
UFO11846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30154-RA | 507 | CG30154-RA | 33..225 | 8..200 | 965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20533521..20533652 | 69..200 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 20533391..20533452 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 770..837 | 123 | 68.1 | Plus |
UFO11846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:04 Download gff for
UFO11846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30154-RA | 9..217 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:09 Download gff for
UFO11846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30154-RA | 25..233 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:13 Download gff for
UFO11846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30154-RA | 24..232 | 1..209 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:13 Download gff for
UFO11846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20533382..20533452 | 1..69 | 94 | -> | Plus |
| 2R | 20533522..20533652 | 70..200 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:09 Download gff for
UFO11846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16420887..16420957 | 1..69 | 94 | -> | Plus |
| arm_2R | 16421027..16421157 | 70..200 | 100 | == | Plus |
