Clone UFO11848 Report

Search the DGRC for UFO11848

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:118
Well:48
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG31686-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11848.5prime Sequence

566 bp (251 high quality bases) assembled on 2012-06-29

> UFO11848.5prime
CAGTCGACATGTTCCGCGCTCAACGTGTTTGCTTTTACTTTATAGCTTTC
CTGGCCTTCGCAGCTGCCAGACCTAAAATAAACTCGCAAATTTCCCAAAA
TCAAGTTGGATTTCGATTGTCCAATGTTTTGACCAAAGAAAGTGTTGCTT
CCAAGTCATCAATGTCCACAGAGGCAACCAGTGAACCATCCACTGTGACT
TCTGACGTGCCCACACTAACTTCACCATCATCATCATCATCTGAGGAAAC
TAGTGAAGCACCTGAAAGTTCCCAGCCCAGCCAACTATCACCATTGACTG
AAAAGCTTCCAGCGGAAAAAGGTATTTTGGAGGTGGACCACAGTAACCTT
TCATCTTTCGCCGGCGGGAAACTAAGTGAAAGCATCTGAAAACTTTCTTA
AGGGATTCCCCCGAAACCACCCCCCCCCCCCCGGAAAGGGGACGTGACAT
TCTTGGAAAAATCCCCCCCAAAAAATGAGTCTTCCGGAAAAATTTCCCCC
AAAAAAAGAAATCCTTCTGGAAAATTTCCCCCCAAAAAATGAAAAACCTC
CCAAAACCAGTGGGGG

UFO11848.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 1581..1998 9..450 1515 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2244673..2244964 9..303 1330 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 03:29:03 has no hits.

UFO11848.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:06 Download gff for UFO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31686-RA 28..354 1..335 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:13 Download gff for UFO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RB 1572..1898 1..335 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:17 Download gff for UFO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RB 1572..1898 1..335 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:17 Download gff for UFO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2244664..2245064 1..420 93 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:13 Download gff for UFO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2244664..2245064 1..420 93 <- Plus