UFO11852.5prime Sequence
1124 bp (997 high quality bases) assembled on 2012-06-29
> UFO11852.5prime
CAGTCGACATGCACTGGCATCTCGATTGTAGCCTAGACATTGAGCCGCAA
CTCCTGGCCAACGGTGGTGCAGCGGCCGTTCCAATCACTCCGGCAAACTG
CCTGAAACAGCAGCACGGTGTGGTGCGAATCAGACCCCGCTCGAACGTGG
AACCGTTCTTTGTTTTTTGCGATCAGAAGGTCAGAAACGGTGGTTGGACA
ATGGTAGTTAATCGTTATGATGGCAGTGAGGATTTCAATCGAAAGTGGGC
GGATTACAAGATCGGTTTCGGGCCACTAACCACCGAGTTCTTCATCGGAT
TGGATAAATTGCATCAGATTACGAGCAGTGACAACTATGAGCTTTTGGTT
CAGCTGCAGAATCGAAAGCAGGAGCTGAGATATGCCCTATATGATCACTT
TAGCATCGGCAGTGAATCGGAACAGTATCGTCTGAATGTCTTGGGGGATT
ATCACGGCGATGCTGCCGATGCATTGCGTGACCACACGGGAAAGAAATTC
AGTACCCACGATAGGGTTAATGATGAAAATGAGCAAAACTGCGCGGCTCA
GCAGTCGGGAGCTTTTTGGTATGGCGGCTCTTGCAATCTCACCAACCCAT
TTGGCCTATATCAACGCCTTCTAGAACGGGATGTTGATGGTTTCAAGGGC
ATTCTATGGCGCGGTTTCTTAAATGGACCCAAAGGTTCCCTGAAAATAGT
TCGCATGATGGTTCGTCCACGCGCCGCTTTAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGGAGTCCAAG
CGAGCTCGATATCAAATTACCGCCCCCGCCCTGCCACTCATCGCAGTACT
GTGGTAGTCATTTAGGCATTCTGGCGGACTGGAGGCCATCCACAACCGGC
AGGATGACCTGGATTCGCAGCGGCCATCAGCACCTTGTGTCCGCCTTGGC
TATATATTGGCCATGGGGACCGGG
UFO11852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RE | 1227 | CG1889-RE | 387..1109 | 9..731 | 3615 | 100 | Plus |
| CG1889-RC | 1223 | CG1889-RC | 387..1105 | 9..731 | 3545 | 99.4 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 387..1105 | 9..731 | 3545 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9965835..9966397 | 30..592 | 2815 | 100 | Plus |
| X | 23542271 | X | 9966458..9966596 | 593..731 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 202..152 | 111 | 68.6 | Minus |
UFO11852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:14 Download gff for
UFO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RB | 381..1112 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:38 Download gff for
UFO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RE | 381..1112 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:39 Download gff for
UFO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RE | 381..1112 | 1..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:39 Download gff for
UFO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9965837..9966397 | 32..592 | 100 | -> | Plus |
| X | 9966458..9966599 | 593..735 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:38 Download gff for
UFO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9859870..9860430 | 32..592 | 100 | -> | Plus |
| arm_X | 9860491..9860632 | 593..735 | 98 | == | Plus |
