UFO11853.5prime Sequence
1090 bp (974 high quality bases) assembled on 2012-06-29
> UFO11853.5prime
CAGTCGACATGGCTCCTCGAGAGAAAGTTGAATTTGTGCTGGTGCGCCTG
GCCTTTGTTCCTTACATAAATCCTCTGTACCCGCGCATCAGCTACCAGAT
CAGAAAGCACGCTCCCACCGGATCGATTATCCAAGTGCGCGATTGGTTCG
AGCATGTGATGATGAGGGAGCGCTCCAAGCTGCCCCCAGATGCTAACATA
CGCTACGCAGAGTGGCGCATCATCACCGGCGACATGGAGCTGTTTCAGGT
GCAGGGCGTCCGCTTCGACAAGATCATGCTGGTGCTGGGCGAAGAAAACA
TCTCGTGGGTCTTCTATCAGAACACGCCACTTTTCCGCCGTATCGAGGGC
AGCGCCTGCTTCCCTGTTAGCTACTGCGGATGCTGCCTGAACAACCAGTA
CCTGGATATTATGGCCAAAATCAAGCAAACTGTGTCGAGGAAAAAGATAC
GAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAG
TTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAACATATTTCTCATAAACCCTTTAGGAAATAGCAGT
TTTCACGTACACGCACATCTGCGATTATATTGTGTAGAACTGCGAAATCG
TCGTGTATCACTCCAGAGCGATGAACGTTCAGTTGCTCATGCAAACGGTG
TAACCAGGTAACCTATCCATATCACAGCTCACGTCCTCAT
UFO11853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34214-RA | 537 | CG34214-RA | 67..510 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24665454..24665838 | 452..68 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 24665898..24665956 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:29:49 has no hits.
UFO11853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:15 Download gff for
UFO11853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34214-RA | 58..512 | 1..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:40 Download gff for
UFO11853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34214-RA | 60..514 | 1..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:41 Download gff for
UFO11853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34214-RA | 60..514 | 1..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:41 Download gff for
UFO11853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24665454..24665838 | 68..452 | 100 | <- | Minus |
| 2R | 24665898..24665963 | 1..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:40 Download gff for
UFO11853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20552977..20553361 | 68..452 | 100 | <- | Minus |
| arm_2R | 20553421..20553486 | 1..67 | 94 | | Minus |
