UFO11856.5prime Sequence
1099 bp (976 high quality bases) assembled on 2012-06-29
> UFO11856.5prime
CAGTCGACATGAAGTTTTTTGCCATCCTCCTCCTTTTGTGCACCATGGTA
GCTGTTGCAATTGCCGCAACAACCACAACCACAACGGAGAACATTGATTG
GGGTTCTGCAAGTACAACTGAAATACCGGCAACAACTACAGCAACTCCAT
GTGAATCAGCTGACGCCAAGAAATTATATTTCTTTTATAAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGT
CTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCCAAGA
ATGTGAATAAAGGCCGATAAAACTTGTGCTTATTTTTCTTTACGTCTTAA
AACGCCGTAATATCCAGCTGAACGGTCTGTTATAGTACATGAGCAACTGA
CTGAAATGCCTCAAATGTTCTTTACGATGCATGGGATATAATCACCGGTG
TATATCAGTGATTTTTTTCCTCCAATTTAGCTTCTAGCCTCCTGAAAGA
UFO11856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42779-RA | 256 | CG42779-RA | 15..199 | 7..191 | 895 | 98.9 | Plus |
| CG42779-RB | 511 | CG42779-RB | 15..199 | 7..191 | 895 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17121591..17121775 | 7..191 | 895 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 03:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 760..827 | 123 | 68.1 | Plus |
UFO11856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:16 Download gff for
UFO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42779-RA | 1..186 | 9..195 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:43 Download gff for
UFO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42779-RA | 10..202 | 1..195 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:45 Download gff for
UFO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42779-RB | 10..202 | 1..195 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 03:59:45 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:53:43 has no hits.
