UFO11860.5prime Sequence
1126 bp (1031 high quality bases) assembled on 2012-06-29
> UFO11860.5prime
CAGTCGACATGGAGGCGATTTATCAATTGGTCGTAATCTTAGCTATTATT
TTTGGGCATCTGCAGTTCCAGTCCACGGTGTTAGCTGACCCTGCTTTTCG
TCGCCCAAATGCCATCGCGCCCGCCCGCACCTATAGCGGTGTATACAACC
ACTCGACGATTCACAGAGCTGTCGAAAAGTCCAATTTGACTGCCCCGGCG
GTTCACCAACCTGTCCTCCAGGCACCCGGATTTATAATACCATATCAGAA
CCGTTCGTTGGTTCACGCCAATCAGGGATCTCATGGCGTTTTACCAGGTA
GCGTTCCAGCGCAAGATTCAGGTCCTTCCAGCGTCTGGGTGGCCAGTAAT
AATCACCAACCAGGAGTAACTGGCGTTCTTCAACCAAACCCATCCCAAGG
TAAAATCGTAAATCCACCATTTGTCATTGGCAAAAATAATGGATCGTTTT
ATTCAACCTATAATGCAACAGTCCCTGGCAGGACTTATCCTTATGGAAAC
CTTTCCATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCA
CCCAGGAATGGCTGAACGAAAAACATATTCCTCAATAACCCTTAGGGAAA
TAGCCCAGGTTTCACCGTAACACGCCACATCTGCCAATATATTATGGTGT
AGAACTGCCGAATTCGTCCTGCTATTCACCTCCCGACCGATGAAACGGTT
CAGGTTGGCTCATGGTACGTACAGGT
UFO11860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42846-RA | 564 | CG42846-RA | 14..516 | 7..509 | 2515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 231019..231487 | 509..41 | 2345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:29:39 has no hits.
UFO11860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:13 Download gff for
UFO11860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42846-RA | 1..504 | 9..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:33 Download gff for
UFO11860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42846-RA | 11..521 | 1..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:35 Download gff for
UFO11860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42846-RA | 11..521 | 1..515 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:35 Download gff for
UFO11860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 231019..231485 | 43..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:33 Download gff for
UFO11860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 231019..231485 | 43..509 | 100 | <- | Minus |
