UFO11862.5prime Sequence
1125 bp (993 high quality bases) assembled on 2012-06-29
> UFO11862.5prime
CAGTCGACATGCGATCCCAGCTAACTATCTTCCTTGCCATCGCGGCTTTC
GTTTCGACTGCCTGGGCACTGACTTCTCCCGCCACGGTCACTGTTTCATC
GGTCACTGTTTCATCGGTCACTATTCCATCGGTCACTATTCCTTCGGTCA
CTATTCCGACCACTGATACAGACACGTCCACCACTTCGCCTTCGGCAACC
GGAAGCAGCACCACCGTGACTCCCACCACCAAGAAACCAAAGAAGAAGGC
TACCGTTGTCCACTACAAGAAGAAGACCCACAAGTCGAACCGACGCCGCA
AGTTCCGCCACTCACGTGATGGAAAGAGGAAGAACCGATCGAGTTGGGAA
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAATCGTCGTGTATTCACTCCAGAGCGATGACACGTTTCAGTTTG
CTCATGGAAACCGGTGTAACAGGGTGACACTATCCCATATCACCAGCTCC
ACCGTTCTTTCATGCATACCGAAATTCCGATGACATTCATAAGCGGCAGA
ATGTGAATACGGCGGATAAACCTGTGGCTTAATTTTTCTTTACGGTCTTT
GAAAGCGTAATATTCCAAGCCTGAC
UFO11862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14143-RA | 494 | CG14143-RA | 11..352 | 9..350 | 1710 | 100 | Plus |
| CG32074-RA | 440 | CG32074-RA | 3..332 | 9..350 | 1290 | 92.2 | Plus |
| nol-RA | 568 | CG32077-RA | 272..379 | 209..313 | 185 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11134997..11135338 | 9..350 | 1710 | 100 | Plus |
| 3L | 28110227 | 3L | 11131991..11132320 | 350..9 | 1235 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:30:08 has no hits.
UFO11862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:19 Download gff for
UFO11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14143-RA | 1..345 | 9..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:54 Download gff for
UFO11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14143-RA | 6..356 | 4..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:52 Download gff for
UFO11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14143-RA | 6..356 | 4..355 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:52 Download gff for
UFO11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11134992..11135338 | 4..350 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:54 Download gff for
UFO11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11128092..11128438 | 4..350 | 99 | == | Plus |
