UFO11866.5prime Sequence
1101 bp (994 high quality bases) assembled on 2012-06-29
> UFO11866.5prime
CAGTCGACATGGATGAATTGTCTGTTGAAGAGCAGGACCTGCTCAAGAAT
ATCTATAGCTTATTGGATAAGGATAACGAAGGTGCCATCACCTCGAAGGA
ATTGGGAATGGTAATCCGAGCATTAGGTCGACAGCCCAATGAATCGGAGG
TTCAGTCCATGATAAACGAGGTGGACTCTGATGGAAACGGATCCATTGCA
AAGGAGGAGTTTTGCAATGTGATTCTGCGCAAGATGCACGACACAAATAA
GGAGGAGGAGCTGCGCGATGCGTTTCGCGTTTTTGATAAGGAAAACAATG
GGTACATCTCCACTACCGAGCTGAGGGCTGTCTTTATGGCACTTGGTGAA
AAATTGGAAGACGACGAGCTGGAGGAGATGATACGCGAGTACGATTTAGA
TCAGGATAATCACATCAATTTCGAGGAGTTCACCAACATGATGACCACGC
GTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAACCCTTTAGGAAATAG
GCCAGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGACTG
CAGAAATCGTCTGTATTCACTCAGAGCGATGAAACGTTCAGTGCTCATGA
AACGGGGTTACAAGGGTGACCTATCCCATTCCACAGCTCCACCGCTCTTC
A
UFO11866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31960-RA | 676 | CG31960-RA | 84..527 | 9..452 | 2220 | 100 | Plus |
| CG31958-RA | 606 | CG31958-RA | 216..475 | 191..450 | 1225 | 98.1 | Plus |
| CG31958-RA | 606 | CG31958-RA | 82..218 | 9..145 | 655 | 98.5 | Plus |
| CG11165-RA | 627 | CG11165-RA | 105..487 | 63..445 | 625 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3785030..3785473 | 9..452 | 2220 | 100 | Plus |
| 2L | 23513712 | 2L | 3785953..3786212 | 191..450 | 1225 | 98.1 | Plus |
| 2L | 23513712 | 2L | 3785819..3785955 | 9..145 | 655 | 98.5 | Plus |
| 2R | 25286936 | 2R | 7949943..7950325 | 63..445 | 625 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:30:21 has no hits.
UFO11866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:21 Download gff for
UFO11866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31960-RA | 81..534 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:03 Download gff for
UFO11866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31960-RA | 80..533 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:58 Download gff for
UFO11866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31960-RA | 80..533 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:58 Download gff for
UFO11866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3785026..3785473 | 1..452 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:03 Download gff for
UFO11866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3785026..3785473 | 1..452 | 99 | == | Plus |
