UFO11867.5prime Sequence
1080 bp (906 high quality bases) assembled on 2012-06-29
> UFO11867.5prime
CAGTCGACATGGCTCTTCGTATTATTTTTGTCTTCATTGCCACAATCGTC
CTGGCGCAAGGATCAAATATTTCGCCAGTTGCGCAGGAGAATCTTGTGCG
GGTCCATCACTCTGGAGTGGTTTCATCTGGAGCTCCTGCCGTTGGTGTTA
CCCAGAGCCGCTCAGTTGTTTCGCAAGCTCAGCGTCCTAACTATGGTCAG
AGATCCATCTCTGGATCTATCGGAGGATCTCGTCGAGTGGGCGAAGTTCC
AGTGTCCGGATCTCGTCCTCATGGTGGTGCTCCTCGTCGTTCTTCTGCAA
GCGCTTATGCTCGTCCCATCGGAGGTGGAGCTACCCCAGGATATGTCCAC
CGCAACCGCAACCAGAAACCATATGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAATCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCACCACCTTGTCGCCCTGCGTATATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCCATATTGCCCCCGTTTAAAA
TCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAAACTATTCT
CATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTGGCGATATTTTGTGTAGAAACTGGCGGAATCCGTCGTGTTATCATTCT
AAAGCGATGAAAACGTTTCAGTTTGCTCTGGGAAAACGGTGTAACAAGGG
TGGAACTCTATTCCATATCACAGCTTCACCGGTCTTCATGCATACGAAAT
TTCTGGAATGATCATCCTCAGGCGGACAGA
UFO11867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42834-RA | 536 | CG42834-RA | 27..392 | 9..374 | 1830 | 100 | Plus |
| CG14332-RA | 513 | CG14332-RA | 220..354 | 202..336 | 225 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17418785..17419150 | 9..374 | 1830 | 100 | Plus |
| 3R | 32079331 | 3R | 17421849..17421983 | 336..202 | 225 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:30:24 has no hits.
UFO11867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:22 Download gff for
UFO11867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42834-RA | 1..369 | 9..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:05 Download gff for
UFO11867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42834-RA | 20..392 | 1..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:59 Download gff for
UFO11867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42834-RA | 20..392 | 1..374 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:59 Download gff for
UFO11867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17418778..17419150 | 1..374 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:05 Download gff for
UFO11867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13244500..13244872 | 1..374 | 98 | == | Plus |
