UFO11870.5prime Sequence
1072 bp (958 high quality bases) assembled on 2012-06-29
> UFO11870.5prime
CAGTCGACATGTGCAAGTTCACCAACCGGCTGTTTGTGTTCGCCCTGCTG
CTTGTGGCACTTGGAAGAATTCTGGCCCAGCCCGTTGGCGGCAAGACTAG
GCCAGGGAATTCGAGGAACGTGATCAGCGACTTGCTGGACGTCTTATACG
ACGACTATTCCGAGAATGGTTTTCAGCGCGAGGACATTCTATACGACCAA
CGGCAAAAGGGTGGGGAGAACTATCAGTTCAAAGTGGATGGGGTCGTCAT
CGGAATGGCGCCTCAAATGAGCTCCAGCTTGCTCTACTCCATGGCAGAGT
CCTACTTGAGTGAAATGTTGTTGCGCCAATCTACACCGGATCCAGATTCA
ACTCAGATGTACGAGAGGGATCCTGAGACCGACACAGACTCTGGTTCCAC
CGAGGGCGTAACTAAGATTCCTGAGCTAGCCCAGATTAATTTGGAAAGCA
GACAACATCAAATTGTAGCTTCTCAAACTGCCAGCCGATCTCCAACTCAA
CTGCTCCAATTGCTTAAGATGCTCAAAAGTTCTAAGGCCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCATATTGTACGTTAA
ATCAAACTGTGAACTCACCAGGATGGCTGAAACGAAAAACATATTCTCAC
TAACCCTTAGAATAGCAGCTTTTCACGTACCGCAATCTGCAATATATGTG
TTAGAACTGCGATCGTCTGAAT
UFO11870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13081-RB | 817 | CG13081-RB | 86..617 | 8..539 | 2660 | 100 | Plus |
| CG13081-RA | 703 | CG13081-RA | 86..617 | 8..539 | 2660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19540692..19540997 | 8..313 | 1530 | 100 | Plus |
| 2L | 23513712 | 2L | 19541049..19541226 | 310..487 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 19541288..19541340 | 487..539 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:29:58 has no hits.
UFO11870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:17 Download gff for
UFO11870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13081-RA | 1..534 | 9..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:46 Download gff for
UFO11870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13081-RA | 80..620 | 1..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:59:47 Download gff for
UFO11870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13081-RA | 80..620 | 1..543 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:59:47 Download gff for
UFO11870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19540686..19540993 | 1..309 | 98 | -> | Plus |
| 2L | 19541049..19541226 | 310..487 | 100 | -> | Plus |
| 2L | 19541289..19541343 | 488..543 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:46 Download gff for
UFO11870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19540686..19540993 | 1..309 | 98 | -> | Plus |
| arm_2L | 19541049..19541226 | 310..487 | 100 | -> | Plus |
| arm_2L | 19541289..19541343 | 488..543 | 96 | == | Plus |
