UFO11874.5prime Sequence
1089 bp (1007 high quality bases) assembled on 2012-06-29
> UFO11874.5prime
CAGTCGACATGAGGCTGCATCTTATACCACTGGTTGGACTCCTTGCACTG
ATTATGGCCCAATCCCAAGTACTCCTACCGGGACTTCGCGTGCGACAGGT
TCCCGTGCTCGAAATGGGCCAGATTCCAGTGGTGCAGTACCTGGACGCGG
CCTCCACAGTCACTCCAGAGCTGGTAAAGGATCAGTTCAGCAGGCGATTC
ACTACGCTGGCCAAACCCTTGGTCAGTGGTGCTGCTCCCCAAACCAGTCT
CCCAAATTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGGTTATTCACTCCAGAGCGATGAA
AACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATC
CATATCACAGCTCACGTCTTTCATTGCCATACGAAATTCGGATGAGCATT
CATCAGGCGGGCAGATTGTGAATAAGGCGATAAACTGTGCTTATTTTTCT
TACGTCTTAGAGCCGTATATCAGCTGACGGTCTGTTAGTAACTGAGCAAC
TGACTGAATGCCTCAATGTCCTTACGATGCATGGTATAT
UFO11874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14664-RC | 1404 | CG14664-RC | 17..268 | 9..260 | 1260 | 100 | Plus |
| CG14664-RB | 360 | CG14664-RB | 17..268 | 9..260 | 1260 | 100 | Plus |
| CG14664-RA | 632 | CG14664-RA | 17..268 | 9..260 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5224155..5224406 | 9..260 | 1260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 220..299 | 818..897 | 129 | 65.4 | Plus |
UFO11874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:27 Download gff for
UFO11874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14664-RA | 8..274 | 1..269 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:22 Download gff for
UFO11874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14664-RA | 8..274 | 1..269 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:13 Download gff for
UFO11874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14664-RA | 8..274 | 1..269 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 04:00:13 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:54:22 has no hits.
