UFO11877.5prime Sequence
1098 bp (1006 high quality bases) assembled on 2012-06-29
> UFO11877.5prime
CAGTCGACATGAAGTCAACTATTCAAATCGGCACCCTGTGCATCGTGGTG
CTCGTGATCTGCTGCCTGGACTTCTCCAGTTCACAGAACTCCTCCTCCAC
TTCCACCAGTCCCACCTACAGCTCGTCCAGCACGCCCAAGAAAGTGTACC
TGTCCAACTTGACGTACTCGATTGTGAGGAAGATCCGTGTGGGCACCACC
ACCGCCAGCAGCACCAGCCGTAGTTCCAGGACCAGGAGCAACCGGAAACT
GAACGCCAAGAAGACCCAGGCCAAACGGAGCCAGGCCAAGCGCTCCGGCA
AGAACAGGAAGTCGAACTCCCGCCGTGCCAGCAGGGGCGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG
TCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAAA
CGTGTAACAAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCC
ATACGAAATCGATGACATCATCAGCGGGCAAGATGTGATTAAGCGAATAA
ACTTGTGCTTTTTTCCTTACGTCTTAAAAGCGTAAAATTCAGCTGAAC
UFO11877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DnaJ-60-RC | 1472 | CG42567-RC | 1025..1356 | 7..338 | 1660 | 100 | Plus |
| CG42568-RB | 1472 | CG42568-RB | 1025..1356 | 7..338 | 1660 | 100 | Plus |
| CG42568-RA | 1468 | CG42568-RA | 1021..1352 | 7..338 | 1660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24157784..24158115 | 338..7 | 1660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:30:53 has no hits.
UFO11877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:28 Download gff for
UFO11877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42568-RB | 1003..1346 | 1..346 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:26 Download gff for
UFO11877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42568-RA | 1015..1358 | 1..346 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:16 Download gff for
UFO11877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42568-RA | 1015..1358 | 1..346 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:16 Download gff for
UFO11877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24157784..24158117 | 1..338 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:26 Download gff for
UFO11877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20045307..20045640 | 1..338 | 98 | | Minus |
