UFO11878.5prime Sequence
1068 bp (971 high quality bases) assembled on 2012-06-29
> UFO11878.5prime
CAGTCGACATGTTTAAGAATTCCGTTGCCTTGACGTGCGAATACTCAACC
ATGTATTATAACTCAATTTATAATACTTCCAACATGTTCGACATGAAACA
CTCCGAAAGTCAAGTTCAGCAACAAATATATAACACAAGTCACCTAGGTT
ATGTGCCAACTTCGAATACTCGGATTGTTAAGAAACGTAATACAGCTAAC
AAAAAGGAGAGAAGGCGAACCCAAAGTATAAACAATGCGTTTTCCTATCT
GCGAGAAAAGATTCCCAACGTTCCTACAGATACTAAATTATCAAAGATTA
AAACATTGAAGTTGGCCATATTGTACATAAACTATTTAGTTAATGTTCTT
GATGGAGATCTGGATCCAAAAGGCGGATTTCGAGCCGAACTTAAGCCGGT
CAGTCGAAAGATCTGTAGCGAAAAGAAGCACTGTTTGAAATCAGAGATTC
AAAATGTTCCATTGTCGACCAAGGGCCGCACGGGTTGGCCACAAGATGTT
TGGGCATCGGAACTTATTCCAGAACATAATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCAGCGGCATCAGCACCTTGTCGCCGTGCGTATATATT
TGCCATGTGAAACGGGGCGAAGAGTTGTCATATTGCCACGTTAAATCAAA
CTGCTGAAACTCACCCAGGATGACTGAAACGAAAACCTATCTCATAAAGC
CTTTAAGAATAGCAGTTCACCGTACACGCACATCTGCCATATATGTGTAG
AACTGCGATCGTCTGATT
UFO11878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hand-RA | 713 | CG18144-RA | 87..608 | 9..530 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10294863..10295059 | 296..100 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 10294474..10294631 | 452..295 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 10295209..10295299 | 99..9 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 10292784..10292866 | 530..448 | 400 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:30:56 has no hits.
UFO11878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:29 Download gff for
UFO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 1..525 | 9..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:28 Download gff for
UFO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 87..611 | 9..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:18 Download gff for
UFO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 87..611 | 9..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:18 Download gff for
UFO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10292784..10292861 | 453..530 | 100 | <- | Minus |
| 2L | 10294474..10294629 | 297..452 | 100 | <- | Minus |
| 2L | 10294863..10295059 | 100..296 | 100 | <- | Minus |
| 2L | 10295209..10295299 | 9..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:28 Download gff for
UFO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10292784..10292861 | 453..530 | 100 | <- | Minus |
| arm_2L | 10294474..10294629 | 297..452 | 100 | <- | Minus |
| arm_2L | 10294863..10295059 | 100..296 | 100 | <- | Minus |
| arm_2L | 10295209..10295299 | 9..99 | 100 | | Minus |
