UFO11880.5prime Sequence
1119 bp (1002 high quality bases) assembled on 2012-06-29
> UFO11880.5prime
CAGTCGACATGGCTAGCATTACCTATGCATTGTGTCTGTGCTCGTTGTTT
ATATTATTCTCGCCTCTTGTGTCCGCGAATCGGCGTGTCCGGCGACAAAA
TCGATCCGATCGCCTGCTGGCCGACATCGGAGTACGTGCCCAGTCCTACG
ATCCCCGTGTGCCGGAAAATGGCATTCAGCAGTACACCGACATCGACCAG
GATCTGCGCCATCTGTTCCTGAACACCAGGCAGACCACGCTGAAATGGGC
CCTTAACAACATCGAGGCGCTGAGCAGTCGCGGCAGACGCGAGGGAAAGC
TCCAGGCTCCGGTGTCCAAGAAGGTGCCCTTCCTGTGTCCCACTAACAAC
ACACGCTCCCCGAGTCCGCCCACTTCCATAGAGCACCTCAGGCCGGGTGA
TATTGACATCATAGCTGCCTTTGGCGACTCCCTGTCCGCAGGCAACGGAA
TACTTTCCAACAATGCCATCGACATGATCAACGAGTTCCGTGGTCTGACC
TTCTCCGGTGGCGGTCTGGCCAACTGGCGAAGATTCGTCACCCTGCCGAA
CATCCTGAAGATCTTTAATCCCAAACTGTACGGTTTCGCGGTGAGCAACA
GCCTGGTGATCAACCACCGATCGTCGCGACTTAACATCGCCGAGCCGATG
ATCATGTCGCGGGATCTGCCCTTCCAGGCTCGCGTACTCATCGATCTGCT
GCGACGCGATCGCCATGTGGACATGAAGCGGCACTGGAAGCTGTTGACAG
TGTATGTGGGAAACAACGACATCTGCTCCGACCTGTGTCACTGGGACACG
CCGCAGAGCTTCCTCGATCAGCACGCCCGCGATCTGCGCCAGGCATTCCG
GCTGCTGCGCGACCATGTGCCGCGCCTGCTTATCAATTTAATTGTGGTGC
CAAACATCCCGCTGGTGTTGAGCACCATGACCAAAGTGCCGCTGCAGTGC
TTCGTGGTGCATCGTGTGGGGTGCCACTGTTCTGATCACGACCGCCTGAA
CCGCACCGAGTTCATGAGCGCATGACACCCTGACGCGTGGCAGCAGCTGG
AATTGGAAATCGCCCGGCTGCCGGGTCCGTCGCCAGACTTTCGCCATCGT
GCCCAATCGAGTGCGACCA
UFO11880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11029-RA | 1805 | CG11029-RA | 117..1223 | 5..1105 | 5235 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5746273..5747373 | 5..1100 | 5075 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 03:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G4 | 3856 | G4 G4_DM 3856bp | 2228..2276 | 924..876 | 110 | 69.4 | Minus |
UFO11880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:30 Download gff for
UFO11880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11029-RA | 1..1111 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:33 Download gff for
UFO11880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11029-RA | 113..1231 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:21 Download gff for
UFO11880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11029-RA | 113..1231 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:21 Download gff for
UFO11880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5746269..5747387 | 1..1114 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:33 Download gff for
UFO11880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5746269..5747387 | 1..1114 | 98 | | Plus |
