UFO11883.5prime Sequence
1114 bp (987 high quality bases) assembled on 2012-06-29
> UFO11883.5prime
CAGTCGACATGGATCAGTCGATGATAGCACTCGCTTTGTTTATAATACTG
CTCGTTTTGCTCTACAAGTGGTCGGTGGCCAAATATGATGTGTTCAGTGA
AAGGGGTGTGTCACATGAGAAGCCATGGCCTCTAATTGGCAATATTCCGC
TGAAAGCCATGATCGGTGGAATGCCAGTACTAAAGAAAATGATCGAATTG
CATACGAAACACACGGGATCCCCGGTATATGGTATCTACGCCCTTCGAGA
TGCCGTCTTCTTTGTCCGAGACCCTGAGCTCATCAAGCTCATCGGCATCA
AGGAATTCGACCACTTCGTTAACCACAATAGCATGCACAACAATATACAG
GAGTCGATACTCTCGAAAAGTCTCATTTCGCTGCGCGATGGTCGATGGAA
GGAGATGCGCAATATCCTGACACCCGCATTTACGGGGAGCAAAATGCGGA
TAATGTACGACCTGATCCAATCGTGCAGCGAGGAGGGCGTTATCCACATA
CAGGAGCAGTTGGAGCTGTCGCAGGACGCGAGCATCGAACTGGAAATGAA
GGATTACTTCACGCGATTCGCCAACGATGTGATTGCTACGGTGGCCTTCG
GCATCAGCATCAACTCGTTCAGGCGCAAAGATAACGAGTTCTTCCGCATC
GGACAAGCCATGTCCAGGATTAGCGCCTGGTCGGTGGTCAAGGCCATGCT
ATATGCCCTCTTTCCACGACTGATGAAGGTTCTCCGCATCCAGGTGCTGG
ACACCAAGAACATTGATTACTTCAGCAGCCTGGTCACCGCGGCGATGAGG
TACCGCCAGGAGCACAAAGTGGTTAGGCCGGATATGATCCACCTGCTGAT
GGAGGCAAAGCAGCAGAGGCTTGCCGATCTGAGTGATAAGTCGAAGGATG
AGCTATACTATTCCGAGTTCACCGCCGATGACTTGCTGGCCAGTGTCTGC
TATTTCTTCTTTGCCGGCGTTGAGATTATCTCGTCGTCTTGTGCTCCTCC
ACCCATGACTCTGCTTGATCCCACGGGTGCAGGACAGGTTGTTATTGAGG
AGAATTCATTTCGGTGCACGAAAAGAGCTGAGTCCACCCTTGACTATGAA
CAGCGTGACGAGGA
UFO11883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9h1-RA | 1617 | CG17577-RA | 37..1106 | 8..1081 | 5035 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12841800..12842522 | 730..8 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 12841357..12841674 | 1042..727 | 1260 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:30:36 has no hits.
UFO11883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:25 Download gff for
UFO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 34..1106 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:15 Download gff for
UFO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 34..1106 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:08 Download gff for
UFO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 34..1106 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:08 Download gff for
UFO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12841349..12841672 | 729..1052 | 96 | <- | Minus |
| 2R | 12841802..12842525 | 1..728 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:15 Download gff for
UFO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8728854..8729177 | 729..1052 | 96 | <- | Minus |
| arm_2R | 8729307..8730030 | 1..728 | 99 | | Minus |
