UFO11884.5prime Sequence
1134 bp (996 high quality bases) assembled on 2012-06-29
> UFO11884.5prime
CAGTCGACATGAGCGGACAAGCGGATATTGCCCTCATCGGCCTGGCCGTC
ATGGGCCAAAACCTGATACTCAACATGGACGAGAAGGGATTCGTGGTGTG
CGCCTACAACCGCACGGTGGCCAAGGTCAAGGAGTTCCTCGCCAATGAGG
CTAAGGACACCAAAGTGATTGGAGCCGACTCGCTCGAGGACATGGTCTCC
AAGCTGAAGAGCCCCCGGAAGGTCATGCTGCTGGTCAAGGCTGGAAGTGC
AGTCGACGACTTCATCCAGCAGCTGGTGCCGCTGCTTTCCGCCGGCGATG
TGATCATCGATGGTGGCAACTCGGAGTATCAGGACACATCTCGCCGCTGC
GACGAGTTAGCCAAACTTGGCCTGCTCTTCGTCGGATCCGGCGTGAGCGG
TGGCGAGGAGGGCGCCCGCCACGGACCCTCGCTGATGCCCGGCGGACACG
AGGCCGCGTGGCCCCTTATCCAACCCATCTTCCAGGCGATCTGCGCCAAG
GCCGACGGTGAACCCTGCTGCGAGTGGGTGGGCGATGGAGGCGCCGGTCA
CTTCGTCAAGATGGTGCACAACGGCATCGAATACGGTGACATGCAGCTGA
TCTGCGAGGCGTACCACATCATGCAGAGCCTGGGACTGTCGGCTGACCAG
ATGGCAGACGAGTTCGGCAAGTGGAACTCGGCCGAACTGGACTCCTTCCT
CATTGAAATCACGCGTGATATTCTTAAGTACAAGGACGGCAAAGGTTATC
TGCTGGAGCGGATTCGCGATACCGCCGGCCAGAAAGGGCACGGGCAAGTG
GACGGCAATCGCTGCTCTGCAGTATGGAGTGCCTGTGACGCTAATTGGCG
AGGCGGTCTTTTTCGCGATGCCTGTCTGCCCTGAAGGACGAGCGCGTCCA
GGCCAGCAGCGTGCTGAAGGGACCCTCGACCAGGCGCAAGGTGGCCACAT
CACAAGTTCCTCGACGACATCAAGCACGCCCTTCTACTGCGCCAAGAATC
GTGTCCTACGCCCAGGGAATTCATGCTTCAGGCGAGAGGCGGCCAGGGAA
AACAAGGTGAAGACTATTTCCGGCGCATTTGCCCCTGATGGTGGACCGGC
GCTTGCAATCCATTCCGCAACGGTCTTTTCTGTG
UFO11884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgd-RB | 1668 | CG3724-RB | 43..1096 | 7..1065 | 4945 | 98.4 | Plus |
| Pgd-RA | 1895 | CG3724-RA | 270..1323 | 7..1065 | 4945 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2147174..2147986 | 240..1056 | 3560 | 97.9 | Plus |
| X | 23542271 | X | 2145489..2145713 | 16..240 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:30:39 has no hits.
UFO11884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:25 Download gff for
UFO11884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1334 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:17 Download gff for
UFO11884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1334 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:09 Download gff for
UFO11884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1334 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:09 Download gff for
UFO11884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2145489..2145713 | 16..240 | 100 | -> | Plus |
| X | 2147175..2148005 | 241..1075 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:17 Download gff for
UFO11884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2039522..2039746 | 16..240 | 100 | -> | Plus |
| arm_X | 2041208..2042038 | 241..1075 | 97 | | Plus |
