UFO11886.5prime Sequence
1095 bp (993 high quality bases) assembled on 2012-06-29
> UFO11886.5prime
CAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTCTGTGCGTC
CTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGCAGACGGAGCGCAA
GTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGTTAACTACA
AGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCTCGTCGCCC
GGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAGATTGTGCT
GTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTCGCACACTC
CTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGTGGTTCAGT
GGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAGCACGCTAT
CGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCTGCAGCTGC
GCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGGAGCAGAAC
TACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAGAGCACCAA
CTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTTGGTTTGCA
TGGGCTTCTGGCATCTATTTAACCTGTTCCACACTTGTGTGTACATTAAC
GAGCAGTGTTTGTGTGTGTGCTGTCTTTATATAAAGAAAATATCTGCCCT
TGGCCTTATCAATGATAAGATTAATGGCTTGCCAGACCCGGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGATCCCCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GACAAATCCAGATGGAGTTCTGAGGTCATTACTGATCTATCACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCTGCCACCTCATCGCAGTA
CTGTTTGTATCATAGCATCTGCCGACTGCAGCCATCAAAACGCATGATGA
CCTGATCGCCAGCGCCATCAGACCTTGTCGCCTGGCTATATAAAT
UFO11886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-RE | 3535 | CG31332-RE | 77..808 | 9..740 | 3660 | 100 | Plus |
| p24-2-RB | 3535 | CG33105-RB | 77..808 | 9..740 | 3660 | 100 | Plus |
| p24-2-RA | 830 | CG33105-RA | 96..827 | 9..740 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9691906..9692505 | 740..141 | 3000 | 100 | Minus |
| 3R | 32079331 | 3R | 9684713..9685185 | 613..141 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 9692567..9692699 | 141..9 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 9685247..9685379 | 141..9 | 650 | 99.2 | Minus |
| 3R | 32079331 | 3R | 9699792..9699920 | 740..612 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:31:13 has no hits.
UFO11886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:32 Download gff for
UFO11886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-115-RE | 68..808 | 1..740 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:39 Download gff for
UFO11886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115b-RE | 68..808 | 1..740 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:00:27 Download gff for
UFO11886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p24-2-RA | 87..830 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 04:00:27 Download gff for
UFO11886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9691906..9692504 | 142..740 | 100 | <- | Minus |
| 3R | 9692567..9692707 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:39 Download gff for
UFO11886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5517628..5518226 | 142..740 | 100 | <- | Minus |
| arm_3R | 5518289..5518429 | 1..141 | 97 | | Minus |
